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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:148.3 nTPM
HPA:148.0 nTPM
GTEx:148.3 nTPM
FANTOM5:223.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA036434Antibody HPA070293Antibody CAB020804
Glandular cells HighHighMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 148.0
overview
Male, age 65
Small intestine sample 232
nTPM: 128.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 146.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 149.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 167.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 148.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 148.3
Samples: 187

Max nTPM: 290.7
Min nTPM: 80.4
Std nTPM: 38.3
Median nTPM: 138.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 290.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 265.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 264.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 259.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 255.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 247.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 243.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 237.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 236.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 233.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 233.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 233.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 229.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 226.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 219.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 209.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 204.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 203.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 202.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 202.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 196.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 195.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 195.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 194.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 191.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 189.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 185.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 183.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 181.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 181.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 176.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 173.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 173.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 171.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 170.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 170.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 169.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 169.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 168.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 168.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 167.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 166.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 166.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 164.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 164.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 163.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 163.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 163.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 162.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 162.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 162.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 161.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 161.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 158.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 157.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 157.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 156.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 156.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 156.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 156.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 155.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 155.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 153.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 152.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 152.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 151.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 151.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 150.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 149.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 149.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 149.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 148.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 148.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 148.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 148.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 147.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 147.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 147.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 144.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 144.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 143.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 143.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 142.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 141.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 141.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 141.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 141.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 141.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 141.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 140.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 139.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 139.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 139.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 138.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 138.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 138.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 138.1
GTEX-1192X-2526-SM-59868 50-59 years, male 138.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 138.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 137.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 137.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 137.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 136.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 136.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 136.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 135.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 135.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 133.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 133.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 133.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 132.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 132.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 131.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 131.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 131.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 130.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 130.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 130.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 129.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 129.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 129.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 128.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 127.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 127.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 127.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 127.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 127.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 126.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 126.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 126.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 126.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 125.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 125.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 125.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 124.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 124.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 124.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 123.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 123.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 122.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 122.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 122.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 121.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 121.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 120.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 120.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 120.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 120.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 120.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 120.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 119.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 119.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 119.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 119.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 119.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 119.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 118.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 118.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 117.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 117.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 116.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 116.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 116.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 116.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 115.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 114.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 111.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 111.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 109.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 109.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 109.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 108.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 107.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 105.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 105.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 105.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 102.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 101.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 101.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 97.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 95.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 93.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 92.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 92.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 90.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 84.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 80.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 223.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 223.9
FF:10024-101D6 15,40,85 years, mixed 223.9

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