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ATP6AP1
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  • ATP6AP1
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:121.6 nTPM
HPA:121.6 nTPM
FANTOM5:331.1 Scaled Tags Per Million
Pig:120.3 nTPM
Allen mouse:10.8 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 121.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 91.8
2188 Female, age 91, both hemispheres 95.0
2301 Female, age 85, both hemispheres 93.5
1984 Male, age 76, both hemispheres 89.7
2090 Male, age 80, both hemispheres 89.0
Dorsal cochlear nucleus
nTPM: 90.7
2187 Female, age 91, both hemispheres 99.5
2058 Male, age 76, both hemispheres 92.9
2370 Male, age 61, both hemispheres 92.2
2802 Male, age 74, right hemisphere 86.2
2378 Male, age 80, both hemispheres 82.9
Dorsal tegmental nucleus
nTPM: 92.7
2083 Male, age 80, both hemispheres 97.7
2326 Male, age 74, both hemispheres 94.4
2358 Male, age 61, both hemispheres 92.7
1936 Male, age 76, left hemisphere 85.9
Dorsolateral tegmental area
nTPM: 94.5
2751 Female, age 85, both hemispheres 97.6
2360 Male, age 74, both hemispheres 97.3
2654 Male, age 80, both hemispheres 95.9
2141 Male, age 76, both hemispheres 95.1
2337 Male, age 61, both hemispheres 86.6
Kolliker-Fuse nucleus
nTPM: 93.0
2163 Male, age 80, both hemispheres 99.9
2793 Female, age 91, left hemisphere 95.9
2315 Male, age 76, right hemisphere 83.3
Lateral lemniscal nuclei
nTPM: 111.1
2036 Male, age 80, both hemispheres 126.0
2746 Female, age 85, left hemisphere 117.3
2169 Male, age 76, both hemispheres 116.4
2453 Male, age 74, right hemisphere 102.6
2320 Female, age 91, left hemisphere 93.2
Lateral parabrachial nucleus
nTPM: 98.7
2139 Female, age 85, right hemisphere 118.5
2013 Male, age 80, both hemispheres 99.2
2790 Male, age 61, both hemispheres 95.7
2792 Male, age 76, both hemispheres 81.4
Lateral vestibular nucleus
nTPM: 92.0
2184 Male, age 76, both hemispheres 92.6
2311 Male, age 80, both hemispheres 91.4
Locus coeruleus
nTPM: 100.8
2123 Female, age 91, both hemispheres 118.5
2014 Male, age 55, unknown 104.7
1980 Male, age 76, both hemispheres 98.9
2317 Female, age 72, unknown 98.9
2720 Male, age 74, both hemispheres 98.7
2162 Male, age 80, both hemispheres 94.6
2788 Male, age 74, unknown 91.3
Medial olivary nucleus
nTPM: 86.9
2138 Female, age 91, both hemispheres 90.0
1962 Male, age 76, both hemispheres 86.6
1943 Male, age 61, both hemispheres 86.5
2851 Male, age 80, both hemispheres 84.5
Medial parabrachial nucleus
nTPM: 96.9
2170 Female, age 91, both hemispheres 109.6
2854 Male, age 80, both hemispheres 99.8
2156 Male, age 61, both hemispheres 95.3
2463 Female, age 85, right hemisphere 92.2
2786 Male, age 76, both hemispheres 87.7
Medial periolivary nuclei
nTPM: 107.9
2171 Female, age 85, both hemispheres 126.9
2063 Male, age 76, both hemispheres 121.7
2791 Male, age 74, right hemisphere 110.9
2081 Male, age 80, both hemispheres 93.6
2458 Female, age 91, both hemispheres 86.4
Motor facial nucleus
nTPM: 105.0
2062 Male, age 76, both hemispheres 128.5
2365 Male, age 74, right hemisphere 123.1
2697 Female, age 85, both hemispheres 99.1
2126 Male, age 61, both hemispheres 97.9
2327 Male, age 80, both hemispheres 94.1
2795 Female, age 91, both hemispheres 87.4
Motor trigeminal nucleus
nTPM: 97.2
2079 Male, age 80, both hemispheres 108.6
2560 Male, age 74, both hemispheres 107.0
2335 Male, age 61, both hemispheres 95.3
2309 Male, age 76, both hemispheres 88.3
2321 Female, age 91, both hemispheres 86.6
Nuclei of the trapezoid body
nTPM: 113.0
2159 Male, age 61, both hemispheres 131.1
2735 Female, age 85, both hemispheres 128.0
1983 Male, age 76, both hemispheres 123.0
2166 Male, age 80, both hemispheres 96.1
2368 Female, age 91, both hemispheres 86.8
Paramedian reticular nucleus
nTPM: 101.1
2050 Female, age 85, both hemispheres 114.6
2313 Male, age 61, both hemispheres 104.8
2057 Male, age 80, both hemispheres 104.1
2052 Male, age 76, both hemispheres 80.9
Pontine nuclei
nTPM: 121.6
2787 Female, age 85, both hemispheres 148.0
2727 Male, age 61, right hemisphere 135.4
1863 Male, age 55, unknown 133.9
2109 Female, age 72, unknown 127.7
2454 Male, age 74, left hemisphere 118.5
1968 Male, age 76, left hemisphere 116.2
2115 Male, age 80, left hemisphere 97.3
2319 Female, age 91, both hemispheres 95.6
Pontine raphe nucleus
nTPM: 107.3
2122 Female, age 85, midline 120.6
2853 Male, age 76, midline 94.0
Posteroventral cochlear nucleus
nTPM: 92.6
2752 Female, age 85, both hemispheres 104.4
2070 Male, age 76, both hemispheres 94.1
2135 Female, age 91, both hemispheres 91.8
2371 Male, age 61, both hemispheres 89.8
2341 Male, age 80, both hemispheres 82.9
Principal sensory trigeminal nucleus
nTPM: 106.2
2158 Male, age 61, both hemispheres 131.9
2008 Male, age 80, left hemisphere 111.4
2367 Female, age 91, left hemisphere 92.7
2324 Male, age 76, both hemispheres 88.8
Reticular pontine nucleus, caudal
nTPM: 97.3
2092 Male, age 76, both hemispheres 104.0
2332 Male, age 80, right hemisphere 102.3
2559 Male, age 74, both hemispheres 97.6
2457 Female, age 91, both hemispheres 85.4
Reticular pontine nucleus, oral
nTPM: 99.1
2012 Female, age 85, both hemispheres 110.0
2361 Male, age 74, both hemispheres 105.7
1939 Male, age 80, both hemispheres 95.7
2167 Male, age 76, both hemispheres 92.6
2366 Female, age 91, both hemispheres 91.7
Reticulotegmental nucleus
nTPM: 93.8
2325 Male, age 76, both hemispheres 99.1
2452 Male, age 74, both hemispheres 95.3
2322 Female, age 91, both hemispheres 91.0
2333 Male, age 80, both hemispheres 89.6
Spinal trigeminal nucleus, oral
nTPM: 92.8
2737 Female, age 85, both hemispheres 96.6
1978 Male, age 76, both hemispheres 91.1
2164 Male, age 80, both hemispheres 90.7
Subcoeruleus area
nTPM: 97.1
2089 Male, age 76, left hemisphere 107.5
1958 Male, age 80, both hemispheres 100.3
2323 Female, age 91, left hemisphere 99.8
2369 Female, age 85, left hemisphere 92.2
2451 Male, age 74, both hemispheres 85.6
Superior olive
nTPM: 108.1
1875 Female, age 85, both hemispheres 124.5
2364 Male, age 74, right hemisphere 122.8
2020 Male, age 76, both hemispheres 105.8
2329 Male, age 80, right hemisphere 97.4
2561 Female, age 91, both hemispheres 90.2
Superior vestibular nucleus
nTPM: 94.7
2383 Male, age 74, both hemispheres 100.6
2015 Male, age 80, both hemispheres 93.5
2061 Male, age 76, both hemispheres 90.1
Ventral periolivary nuclei
nTPM: 105.9
2130 Female, age 85, both hemispheres 126.9
2165 Male, age 80, both hemispheres 108.2
2023 Male, age 76, both hemispheres 103.0
2794 Female, age 91, left hemisphere 85.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 99.8
2449 Male, age 74, both hemispheres 114.6
2840 Female, age 85, both hemispheres 103.8
1959 Male, age 76, both hemispheres 103.7
2161 Male, age 80, both hemispheres 99.0
2359 Male, age 61, both hemispheres 89.4
2456 Female, age 91, both hemispheres 88.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 331.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 137.1
FF:10165-103B3 76 years, female 144.2
FF:10182-103D2 60 years, female 130.0
Pons
Scaled Tags Per Million: 331.1
FF:10033-101E6 18-54 years, mixed 331.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 120.3
Pig sample Sample description nTPM
Pons
nTPM: 120.4
Samples: 4

Max nTPM: 181.3
Min nTPM: 90.1
Sample A Female 181.3
Sample B Female 90.1
Sample C Male 92.2
Sample D Male 117.8

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 10.8
69549631 Antisense, RP_050303_02_G05, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.