BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:11.3 nTPM
HPA:11.3 nTPM
GTEx:56.5 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:34.7 nTPM
Mouse:142.9 nTPM
Allen mouse:14.3 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB013265
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.8
2289 Male, age 61, right hemisphere 10.4
1781 Male, age 74, unknown 9.9
1854 Male, age 80, left hemisphere 9.2
2846 Female, age 79, unknown 9.2
2290 Female, age 72, unknown 8.8
2288 Male, age 75, left hemisphere 8.1
1857 Female, age 85, left hemisphere 7.9
2481 Female, age 94, left hemisphere 7.2
Claustrum
nTPM: 11.3
2645 Female, age 72, unknown 17.1
2568 Male, age 61, both hemispheres 13.3
2284 Female, age 91, both hemispheres 11.8
2491 Male, age 75, both hemispheres 11.3
2292 Female, age 85, both hemispheres 10.8
2198 Male, age 80, both hemispheres 10.1
2392 Female, age 94, both hemispheres 9.5
1956 Male, age 74, unknown 8.8
2196 Female, age 79, unknown 8.8
Globus pallidus, externus
nTPM: 11.3
2567 Female, age 72, unknown 17.2
2646 Male, age 61, right hemisphere 12.4
2772 Female, age 79, unknown 9.2
1996 Male, age 80, right hemisphere 9.0
2395 Male, age 75, both hemispheres 8.6
Globus pallidus, internus
nTPM: 10.1
2566 Female, age 72, unknown 13.7
2111 Female, age 85, right hemisphere 12.5
1818 Male, age 74, unknown 11.0
2778 Female, age 91, both hemispheres 9.3
2483 Female, age 94, right hemisphere 9.2
2037 Male, age 80, right hemisphere 8.3
2287 Male, age 75, right hemisphere 6.6
Nucleus accumbens
nTPM: 9.0
1783 Male, age 74, unknown 11.4
1856 Female, age 91, right hemisphere 10.3
2824 Male, age 61, right hemisphere 9.6
2732 Male, age 80, right hemisphere 9.4
2391 Female, age 94, left hemisphere 8.2
1806 Female, age 85, left hemisphere 8.1
2286 Male, age 75, left hemisphere 7.8
2698 Female, age 72, unknown 6.9
Nucleus basalis of Meynert
nTPM: 10.3
2569 Male, age 61, both hemispheres 12.2
2393 Male, age 80, right hemisphere 9.9
2484 Female, age 94, left hemisphere 9.7
2821 Male, age 75, both hemispheres 9.6
Nucleus of the diagonal band
nTPM: 9.0
2029 Male, age 61, right hemisphere 11.0
1812 Female, age 91, both hemispheres 9.3
2775 Male, age 80, right hemisphere 8.8
1979 Male, age 74, unknown 8.4
2195 Female, age 85, both hemispheres 7.7
Olfactory tubercle
nTPM: 9.4
1998 Female, age 91, both hemispheres 10.7
2856 Male, age 75, right hemisphere 10.2
2487 Female, age 94, left hemisphere 9.1
1846 Male, age 80, right hemisphere 7.7
Putamen
nTPM: 11.2
2647 Male, age 75, left hemisphere 15.3
2489 Female, age 72, unknown 13.2
1829 Male, age 74, unknown 12.2
2466 Female, age 79, unknown 11.7
1838 Male, age 80, right hemisphere 8.9
2482 Female, age 94, left hemisphere 8.7
1937 Female, age 91, right hemisphere 8.4
Septal nuclei
nTPM: 9.1
2059 Female, age 85, both hemispheres 12.0
2394 Male, age 61, left hemisphere 9.8
2199 Male, age 80, right hemisphere 8.7
1960 Male, age 74, unknown 8.6
2629 Female, age 94, right hemisphere 8.6
2009 Female, age 91, both hemispheres 8.4
2031 Female, age 72, unknown 7.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.9
Samples: 246

Max nTPM: 107.5
Min nTPM: 17.8
Std nTPM: 12.1
Median nTPM: 50.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 107.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 96.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 83.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 83.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 79.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 79.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 78.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 77.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 77.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 74.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 73.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.4
Samples: 246

Max nTPM: 107.7
Min nTPM: 24.2
Std nTPM: 14.4
Median nTPM: 50.3
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 107.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 105.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 91.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 90.3
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 85.2
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 83.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 82.7
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 82.2
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 81.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 81.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 80.8
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Brain - Putamen (basal ganglia)
Average nTPM: 56.5
Samples: 205

Max nTPM: 113.5
Min nTPM: 28.0
Std nTPM: 12.6
Median nTPM: 54.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 113.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 88.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 88.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 86.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 85.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 83.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 82.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 82.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 82.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 80.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 80.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.0
FF:10164-103B2 76 years, female 21.0
Globus pallidus
Scaled Tags Per Million: 16.6
FF:10161-103A8 76 years, female 22.9
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 14.3
FF:10037-101F1 23-56 years, mixed 14.3
Putamen
Scaled Tags Per Million: 11.6
FF:10176-103C5 60 years, female 11.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.7
Pig sample Sample description nTPM
Caudate
nTPM: 30.6
Samples: 4

Max nTPM: 37.5
Min nTPM: 24.9
Sample A Female 24.9
Sample B Female 32.8
Sample C Male 37.5
Sample D Male 27.3
Putamen
nTPM: 34.7
Samples: 4

Max nTPM: 41.5
Min nTPM: 27.6
Sample A Female 33.8
Sample B Female 27.6
Sample C Male 41.5
Sample D Male 35.9
Septum
nTPM: 28.3
Samples: 4

Max nTPM: 32.2
Min nTPM: 21.1
Sample A Female 31.5
Sample B Female 28.5
Sample C Male 32.2
Sample D Male 21.1
Ventral pallidum
nTPM: 30.8
Samples: 4

Max nTPM: 40.7
Min nTPM: 24.7
Sample A Female 24.7
Sample B Female 29.4
Sample C Male 40.7
Sample D Male 28.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 142.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 142.9
Samples: 4

Max nTPM: 164.0
Min nTPM: 131.1
Sample A Male 131.1
Sample B Male 164.0
Sample C Female 134.3
Sample D Female 142.3
Septum
nTPM: 114.3
Samples: 4

Max nTPM: 122.3
Min nTPM: 105.6
Sample A Male 122.3
Sample B Male 119.7
Sample C Female 109.6
Sample D Female 105.6
Ventral forebrain
nTPM: 133.7
Samples: 4

Max nTPM: 142.7
Min nTPM: 125.3
Sample A Male 140.3
Sample B Male 126.4
Sample C Female 142.7
Sample D Female 125.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.3
69080515 Antisense, RP_050324_02_C04, Mouse strain C57BL/6J (56 days, male) 14.3
Pallidum
Expression energy: 13.8
69080515 Antisense, RP_050324_02_C04, Mouse strain C57BL/6J (56 days, male) 13.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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