BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:49.1 nTPM
HPA:49.1 nTPM
GTEx:42.2 nTPM
FANTOM5:39.0 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:19.9 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB025016
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 49.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.5
2481 Female, age 94, left hemisphere 41.3
2288 Male, age 75, left hemisphere 41.2
1781 Male, age 74, unknown 40.5
2289 Male, age 61, right hemisphere 40.3
1857 Female, age 85, left hemisphere 39.2
2846 Female, age 79, unknown 38.6
2290 Female, age 72, unknown 37.4
1854 Male, age 80, left hemisphere 37.2
Claustrum
nTPM: 41.7
2292 Female, age 85, both hemispheres 46.6
1956 Male, age 74, unknown 44.1
2491 Male, age 75, both hemispheres 43.1
2284 Female, age 91, both hemispheres 42.6
2196 Female, age 79, unknown 42.1
2645 Female, age 72, unknown 40.4
2568 Male, age 61, both hemispheres 39.3
2198 Male, age 80, both hemispheres 39.0
2392 Female, age 94, both hemispheres 38.2
Globus pallidus, externus
nTPM: 49.1
1996 Male, age 80, right hemisphere 54.2
2772 Female, age 79, unknown 51.5
2646 Male, age 61, right hemisphere 49.1
2567 Female, age 72, unknown 47.6
2395 Male, age 75, both hemispheres 43.1
Globus pallidus, internus
nTPM: 49.1
2287 Male, age 75, right hemisphere 51.9
2778 Female, age 91, both hemispheres 51.7
2566 Female, age 72, unknown 50.3
2111 Female, age 85, right hemisphere 49.7
1818 Male, age 74, unknown 47.4
2037 Male, age 80, right hemisphere 46.9
2483 Female, age 94, right hemisphere 46.0
Nucleus accumbens
nTPM: 40.3
2391 Female, age 94, left hemisphere 43.8
2732 Male, age 80, right hemisphere 42.3
2698 Female, age 72, unknown 41.1
1783 Male, age 74, unknown 40.8
1806 Female, age 85, left hemisphere 39.6
2824 Male, age 61, right hemisphere 39.4
2286 Male, age 75, left hemisphere 38.7
1856 Female, age 91, right hemisphere 36.4
Nucleus basalis of Meynert
nTPM: 41.7
2569 Male, age 61, both hemispheres 51.0
2484 Female, age 94, left hemisphere 40.1
2821 Male, age 75, both hemispheres 39.4
2393 Male, age 80, right hemisphere 36.6
Nucleus of the diagonal band
nTPM: 38.0
1812 Female, age 91, both hemispheres 39.8
2195 Female, age 85, both hemispheres 37.8
2775 Male, age 80, right hemisphere 37.6
1979 Male, age 74, unknown 37.5
2029 Male, age 61, right hemisphere 37.4
Olfactory tubercle
nTPM: 37.2
1998 Female, age 91, both hemispheres 38.4
2487 Female, age 94, left hemisphere 37.6
2856 Male, age 75, right hemisphere 36.7
1846 Male, age 80, right hemisphere 36.0
Putamen
nTPM: 38.6
2647 Male, age 75, left hemisphere 42.3
2482 Female, age 94, left hemisphere 41.1
1829 Male, age 74, unknown 39.3
1937 Female, age 91, right hemisphere 37.9
2466 Female, age 79, unknown 37.6
1838 Male, age 80, right hemisphere 36.7
2489 Female, age 72, unknown 35.6
Septal nuclei
nTPM: 38.1
2394 Male, age 61, left hemisphere 40.6
2199 Male, age 80, right hemisphere 39.3
2059 Female, age 85, both hemispheres 38.3
2629 Female, age 94, right hemisphere 38.0
2031 Female, age 72, unknown 37.2
2009 Female, age 91, both hemispheres 36.7
1960 Male, age 74, unknown 36.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.7
Samples: 246

Max nTPM: 70.7
Min nTPM: 13.0
Std nTPM: 8.7
Median nTPM: 35.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 70.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 67.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 63.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 63.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 61.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 61.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 60.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 60.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 58.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 53.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 53.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.1
Samples: 246

Max nTPM: 94.7
Min nTPM: 16.6
Std nTPM: 11.2
Median nTPM: 36.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 94.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 73.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 67.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 67.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 65.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 65.8
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 64.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 64.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 64.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 63.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 62.7
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Brain - Putamen (basal ganglia)
Average nTPM: 42.2
Samples: 205

Max nTPM: 72.8
Min nTPM: 19.6
Std nTPM: 8.5
Median nTPM: 41.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 72.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 71.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 69.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 61.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 61.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 59.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 59.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 59.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 57.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 57.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 57.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.1
FF:10164-103B2 76 years, female 31.1
Globus pallidus
Scaled Tags Per Million: 34.7
FF:10175-103C4 60 years, female 37.1
FF:10161-103A8 76 years, female 32.3
Nucleus accumbens
Scaled Tags Per Million: 33.1
FF:10037-101F1 23-56 years, mixed 33.1
Putamen
Scaled Tags Per Million: 39.0
FF:10176-103C5 60 years, female 39.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Caudate
nTPM: 16.1
Samples: 4

Max nTPM: 18.4
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 18.4
Sample C Male 18.4
Sample D Male 15.6
Putamen
nTPM: 16.8
Samples: 4

Max nTPM: 18.8
Min nTPM: 14.5
Sample A Female 14.5
Sample B Female 16.4
Sample C Male 18.8
Sample D Male 17.3
Septum
nTPM: 14.8
Samples: 4

Max nTPM: 16.1
Min nTPM: 13.2
Sample A Female 14.3
Sample B Female 15.7
Sample C Male 16.1
Sample D Male 13.2
Ventral pallidum
nTPM: 16.3
Samples: 4

Max nTPM: 20.0
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 16.6
Sample C Male 20.0
Sample D Male 16.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.9
Samples: 4

Max nTPM: 20.1
Min nTPM: 19.5
Sample A Male 19.5
Sample B Male 19.8
Sample C Female 20.1
Sample D Female 20.1
Septum
nTPM: 18.9
Samples: 4

Max nTPM: 21.1
Min nTPM: 17.8
Sample A Male 18.5
Sample B Male 21.1
Sample C Female 17.8
Sample D Female 18.2
Ventral forebrain
nTPM: 18.7
Samples: 4

Max nTPM: 19.8
Min nTPM: 16.5
Sample A Male 19.2
Sample B Male 19.4
Sample C Female 19.8
Sample D Female 16.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
69201636 Antisense, RP_050324_03_A01, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 1.2
69201636 Antisense, RP_050324_03_A01, Mouse strain C57BL/6J (56 days, male) 1.2

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