BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:38.8 nTPM
HPA:38.8 nTPM
GTEx:37.3 nTPM
FANTOM5:91.5 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:3.1 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA014757
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.3
2481 Female, age 94, left hemisphere 41.2
1857 Female, age 85, left hemisphere 36.9
2290 Female, age 72, unknown 36.8
2288 Male, age 75, left hemisphere 36.2
1854 Male, age 80, left hemisphere 32.8
2289 Male, age 61, right hemisphere 30.8
2846 Female, age 79, unknown 28.1
1781 Male, age 74, unknown 23.4
Claustrum
nTPM: 20.7
2196 Female, age 79, unknown 25.2
2392 Female, age 94, both hemispheres 23.2
2292 Female, age 85, both hemispheres 21.3
1956 Male, age 74, unknown 20.2
2198 Male, age 80, both hemispheres 20.0
2491 Male, age 75, both hemispheres 19.6
2645 Female, age 72, unknown 19.6
2568 Male, age 61, both hemispheres 19.0
2284 Female, age 91, both hemispheres 18.3
Globus pallidus, externus
nTPM: 38.8
1996 Male, age 80, right hemisphere 50.6
2646 Male, age 61, right hemisphere 47.2
2772 Female, age 79, unknown 35.4
2395 Male, age 75, both hemispheres 33.5
2567 Female, age 72, unknown 27.4
Globus pallidus, internus
nTPM: 36.9
2037 Male, age 80, right hemisphere 46.6
2483 Female, age 94, right hemisphere 43.2
1818 Male, age 74, unknown 37.2
2287 Male, age 75, right hemisphere 35.7
2778 Female, age 91, both hemispheres 35.4
2111 Female, age 85, right hemisphere 34.4
2566 Female, age 72, unknown 25.6
Nucleus accumbens
nTPM: 30.4
2286 Male, age 75, left hemisphere 36.7
2391 Female, age 94, left hemisphere 33.5
1806 Female, age 85, left hemisphere 32.8
2732 Male, age 80, right hemisphere 31.5
2698 Female, age 72, unknown 31.2
2824 Male, age 61, right hemisphere 26.4
1783 Male, age 74, unknown 25.7
1856 Female, age 91, right hemisphere 25.6
Nucleus basalis of Meynert
nTPM: 34.8
2569 Male, age 61, both hemispheres 52.2
2393 Male, age 80, right hemisphere 31.4
2821 Male, age 75, both hemispheres 29.9
2484 Female, age 94, left hemisphere 25.7
Nucleus of the diagonal band
nTPM: 22.7
1812 Female, age 91, both hemispheres 29.2
1979 Male, age 74, unknown 25.4
2775 Male, age 80, right hemisphere 20.7
2195 Female, age 85, both hemispheres 20.2
2029 Male, age 61, right hemisphere 18.1
Olfactory tubercle
nTPM: 22.7
1846 Male, age 80, right hemisphere 29.9
2856 Male, age 75, right hemisphere 22.7
2487 Female, age 94, left hemisphere 19.3
1998 Female, age 91, both hemispheres 18.8
Putamen
nTPM: 28.3
2482 Female, age 94, left hemisphere 35.1
2489 Female, age 72, unknown 31.1
1937 Female, age 91, right hemisphere 27.4
1829 Male, age 74, unknown 27.1
2466 Female, age 79, unknown 26.2
1838 Male, age 80, right hemisphere 25.6
2647 Male, age 75, left hemisphere 25.4
Septal nuclei
nTPM: 25.8
2199 Male, age 80, right hemisphere 33.4
2394 Male, age 61, left hemisphere 27.7
2009 Female, age 91, both hemispheres 27.4
2059 Female, age 85, both hemispheres 26.3
2629 Female, age 94, right hemisphere 25.6
2031 Female, age 72, unknown 21.4
1960 Male, age 74, unknown 18.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.3
Samples: 246

Max nTPM: 89.7
Min nTPM: 7.3
Std nTPM: 14.2
Median nTPM: 36.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 89.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 87.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 84.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 77.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 73.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 68.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 68.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 66.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 62.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 62.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 62.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.3
Samples: 246

Max nTPM: 78.7
Min nTPM: 4.8
Std nTPM: 12.2
Median nTPM: 25.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 78.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 69.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 67.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 61.4
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 60.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 59.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 57.9
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 54.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 53.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 52.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 51.6
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Brain - Putamen (basal ganglia)
Average nTPM: 31.5
Samples: 205

Max nTPM: 76.7
Min nTPM: 6.2
Std nTPM: 13.2
Median nTPM: 30.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 76.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 75.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 71.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 65.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 59.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 59.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 59.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 56.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 56.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 54.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 54.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 86.7
FF:10164-103B2 76 years, female 86.7
Globus pallidus
Scaled Tags Per Million: 91.5
FF:10175-103C4 60 years, female 103.4
FF:10161-103A8 76 years, female 79.6
Nucleus accumbens
Scaled Tags Per Million: 74.8
FF:10037-101F1 23-56 years, mixed 74.8
Putamen
Scaled Tags Per Million: 60.7
FF:10176-103C5 60 years, female 60.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Caudate
nTPM: 9.9
Samples: 4

Max nTPM: 10.7
Min nTPM: 9.3
Sample A Female 9.3
Sample B Female 10.7
Sample C Male 10.0
Sample D Male 9.4
Putamen
nTPM: 11.4
Samples: 4

Max nTPM: 16.0
Min nTPM: 9.0
Sample A Female 16.0
Sample B Female 9.0
Sample C Male 9.6
Sample D Male 10.8
Septum
nTPM: 13.2
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.1
Sample A Female 12.3
Sample B Female 12.1
Sample C Male 15.7
Sample D Male 12.7
Ventral pallidum
nTPM: 11.3
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 13.3
Sample C Male 10.7
Sample D Male 12.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.7
Sample A Male 0.7
Sample B Male 0.7
Sample C Female 1.3
Sample D Female 1.5
Septum
nTPM: 3.1
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.9
Sample A Male 1.9
Sample B Male 3.6
Sample C Female 3.5
Sample D Female 3.2
Ventral forebrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.9
Sample A Male 1.5
Sample B Male 0.9
Sample C Female 1.9
Sample D Female 1.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68523342 Antisense, RP_050118_02_E11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68523342 Antisense, RP_050118_02_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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