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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:19.3 nTPM
HPA:19.3 nTPM
GTEx:39.5 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:39.0 nTPM
Mouse:100.3 nTPM
Allen mouse:4.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 19.3
Sample id Sample description nTPM
Amygdala
nTPM: 6.9
2814 Male, age 76, right hemisphere 9.9
2517 Female, age 94, left hemisphere 9.4
1987 Female, age 91, left hemisphere 6.8
2695 Female, age 67, right hemisphere 4.8
2514 Male, age 75, right hemisphere 3.5
Basal amygdala
nTPM: 19.3
2243 Female, age 91, right hemisphere 25.5
2827 Female, age 67, right hemisphere 25.4
2685 Female, age 94, left hemisphere 24.0
2110 Male, age 80, left hemisphere 14.3
2609 Male, age 75, right hemisphere 13.5
1955 Male, age 76, both hemispheres 13.2
Central amygdala
nTPM: 11.2
2239 Male, age 80, left hemisphere 16.9
2826 Female, age 94, left hemisphere 16.2
1905 Male, age 76, both hemispheres 11.1
2701 Female, age 91, right hemisphere 6.5
2515 Male, age 75, right hemisphere 5.5
Corticomedial amygdala
nTPM: 16.2
2535 Female, age 67, right hemisphere 25.8
2242 Female, age 91, right hemisphere 19.7
2829 Male, age 80, left hemisphere 18.8
2429 Female, age 94, left hemisphere 15.2
2240 Male, age 76, both hemispheres 9.9
2428 Male, age 75, right hemisphere 7.6
Lateral amygdala
nTPM: 14.3
2534 Female, age 94, left hemisphere 19.0
2256 Male, age 80, left hemisphere 17.3
2255 Female, age 91, right hemisphere 14.7
1883 Male, age 76, both hemispheres 14.6
2830 Female, age 67, right hemisphere 14.5
2516 Male, age 75, right hemisphere 5.8
Stria terminalis, bed nucleus
nTPM: 13.1
2486 Female, age 94, both hemispheres 17.5
1974 Female, age 91, both hemispheres 13.6
2201 Male, age 74, unknown 8.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 39.5
Samples: 152

Max nTPM: 77.4
Min nTPM: 6.9
Std nTPM: 11.0
Median nTPM: 39.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 77.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 64.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 63.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 60.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 59.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 59.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 57.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 56.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 56.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 55.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 55.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 55.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 55.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 54.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 53.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 53.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 53.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 52.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 51.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 51.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 50.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 50.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 49.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 48.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 48.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 48.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 48.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 48.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 48.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 48.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 47.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 47.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 47.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 47.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 47.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 47.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 47.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 46.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 46.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 46.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 45.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 45.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 45.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 45.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 45.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 45.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 44.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 44.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 44.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 44.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 44.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 44.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 44.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 43.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 43.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 43.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 42.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 42.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 42.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 41.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 41.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 41.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 41.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 41.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 41.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 41.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 41.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 40.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 40.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 40.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 40.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 40.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 40.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 40.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 40.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 39.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 39.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 39.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 39.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 39.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 39.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 38.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 38.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 38.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 38.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 38.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 38.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 38.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 38.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 38.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 38.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 38.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 37.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 37.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 37.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 36.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 36.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 36.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 36.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 35.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 35.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 35.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 35.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 35.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 35.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 34.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 33.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 33.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 32.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 32.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 32.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 32.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 32.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 32.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 31.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 31.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 30.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 30.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 30.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 30.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 29.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 29.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 29.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 28.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 27.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 27.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 26.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 26.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 25.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 25.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 25.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 24.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 23.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 23.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 23.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 23.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 22.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 22.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 22.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 22.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 22.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 21.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 20.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 19.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 18.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 11.6
FF:10151-102I7 76 years, female 11.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.0
Pig sample Sample description nTPM
Amygdala
nTPM: 39.0
Samples: 4

Max nTPM: 49.6
Min nTPM: 26.9
Sample A Female 49.6
Sample B Female 26.9
Sample C Male 40.1
Sample D Male 39.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 100.4
Samples: 4

Max nTPM: 115.7
Min nTPM: 94.1
Sample A Male 94.6
Sample B Male 94.1
Sample C Female 115.7
Sample D Female 97.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.2
71211689 Antisense, RP_050816_02_B08, Mouse strain C57BL/6J (56 days, male) 4.2

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