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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:106.9 nTPM
HPA:52.9 nTPM
GTEx:106.9 nTPM
FANTOM5:172.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA006035
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 52.9
overview
Male, age 65
Small intestine sample 232
nTPM: 25.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 57.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 69.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 59

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 106.9
Samples: 187

Max nTPM: 623.9
Min nTPM: 18.6
Std nTPM: 124.7
Median nTPM: 52.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 623.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 525.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 520.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 502.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 480.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 477.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 465.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 441.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 439.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 437.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 434.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 412.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 408.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 397.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 366.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 362.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 354.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 347.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 343.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 298.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 280.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 248.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 236.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 222.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 221.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 210.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 194.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 192.9
GTEX-1192X-2526-SM-59868 50-59 years, male 189.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 185.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 183.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 169.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 168.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 167.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 164.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 152.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 141.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 136.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 135.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 124.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 117.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 114.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 114.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 114.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 112.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 112.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 111.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 102.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 99.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 98.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 97.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 95.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 95.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 88.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 87.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 85.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 83.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 82.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 80.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 80.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 79.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 77.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 76.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 75.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 71.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 71.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 71.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 70.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 69.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 69.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 68.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 68.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 67.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 67.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 66.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 64.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 63.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 63.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 63.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 61.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 60.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 59.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 58.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 57.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 57.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 56.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 55.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 55.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 53.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 53.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 53.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 52.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 52.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 52.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 51.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 50.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 50.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 50.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 50.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 49.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 48.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 48.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 48.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 48.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 47.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 47.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 46.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 46.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 46.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 46.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 45.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 45.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 45.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 44.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 44.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 43.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 42.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 42.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 42.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 42.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 42.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 42.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 41.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 41.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 41.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 40.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 40.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 40.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 40.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 40.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 39.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 39.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 39.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 39.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 39.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 39.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 39.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 38.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 38.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 38.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 38.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 37.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 37.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 37.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 37.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 36.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 36.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 36.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 35.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 35.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 35.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 34.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 34.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 34.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 34.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 34.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 34.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 33.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 33.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 33.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 33.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 32.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 31.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 31.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 30.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 30.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 29.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 29.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 29.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 29.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 29.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 29.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 29.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 29.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 28.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 28.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 28.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 27.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 26.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 26.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 26.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 26.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 24.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 24.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 23.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 22.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 18.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 172.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 172.9
FF:10024-101D6 15,40,85 years, mixed 172.9

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