BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:16.1 nTPM
HPA:16.1 nTPM
GTEx:17.3 nTPM
FANTOM5:70.8 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:59.3 nTPM
Allen mouse:3.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038790
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.6
2846 Female, age 79, unknown 18.8
2290 Female, age 72, unknown 17.5
1857 Female, age 85, left hemisphere 16.7
1854 Male, age 80, left hemisphere 14.2
1781 Male, age 74, unknown 13.8
2289 Male, age 61, right hemisphere 12.2
2288 Male, age 75, left hemisphere 11.6
2481 Female, age 94, left hemisphere 4.1
Claustrum
nTPM: 13.8
2645 Female, age 72, unknown 18.4
2568 Male, age 61, both hemispheres 17.2
1956 Male, age 74, unknown 15.0
2196 Female, age 79, unknown 14.7
2292 Female, age 85, both hemispheres 14.4
2284 Female, age 91, both hemispheres 12.0
2198 Male, age 80, both hemispheres 11.3
2491 Male, age 75, both hemispheres 11.0
2392 Female, age 94, both hemispheres 9.9
Globus pallidus, externus
nTPM: 9.4
2646 Male, age 61, right hemisphere 14.1
2567 Female, age 72, unknown 12.3
2395 Male, age 75, both hemispheres 11.9
1996 Male, age 80, right hemisphere 5.0
2772 Female, age 79, unknown 3.5
Globus pallidus, internus
nTPM: 8.8
2566 Female, age 72, unknown 13.8
2111 Female, age 85, right hemisphere 11.2
2778 Female, age 91, both hemispheres 10.8
2287 Male, age 75, right hemisphere 8.4
2483 Female, age 94, right hemisphere 6.7
2037 Male, age 80, right hemisphere 6.2
1818 Male, age 74, unknown 4.5
Nucleus accumbens
nTPM: 13.3
1783 Male, age 74, unknown 20.7
1806 Female, age 85, left hemisphere 18.0
2824 Male, age 61, right hemisphere 14.7
2698 Female, age 72, unknown 13.7
1856 Female, age 91, right hemisphere 13.3
2732 Male, age 80, right hemisphere 9.6
2286 Male, age 75, left hemisphere 9.2
2391 Female, age 94, left hemisphere 7.3
Nucleus basalis of Meynert
nTPM: 12.5
2569 Male, age 61, both hemispheres 15.1
2393 Male, age 80, right hemisphere 13.0
2821 Male, age 75, both hemispheres 11.3
2484 Female, age 94, left hemisphere 10.7
Nucleus of the diagonal band
nTPM: 13.2
2195 Female, age 85, both hemispheres 18.3
2029 Male, age 61, right hemisphere 15.6
2775 Male, age 80, right hemisphere 13.2
1812 Female, age 91, both hemispheres 10.0
1979 Male, age 74, unknown 8.8
Olfactory tubercle
nTPM: 11.2
2487 Female, age 94, left hemisphere 13.3
1998 Female, age 91, both hemispheres 11.3
1846 Male, age 80, right hemisphere 10.9
2856 Male, age 75, right hemisphere 9.4
Putamen
nTPM: 16.1
2489 Female, age 72, unknown 21.8
2466 Female, age 79, unknown 20.4
1829 Male, age 74, unknown 17.3
2647 Male, age 75, left hemisphere 16.9
1838 Male, age 80, right hemisphere 16.5
1937 Female, age 91, right hemisphere 13.1
2482 Female, age 94, left hemisphere 6.5
Septal nuclei
nTPM: 11.4
1960 Male, age 74, unknown 17.6
2031 Female, age 72, unknown 12.7
2629 Female, age 94, right hemisphere 12.5
2059 Female, age 85, both hemispheres 11.0
2009 Female, age 91, both hemispheres 10.6
2394 Male, age 61, left hemisphere 8.2
2199 Male, age 80, right hemisphere 6.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.2
Samples: 246

Max nTPM: 23.7
Min nTPM: 7.2
Std nTPM: 3.4
Median nTPM: 15.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 23.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 23.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 23.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 22.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 22.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 22.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 22.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 22.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 22.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 22.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 22.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.3
Samples: 246

Max nTPM: 29.2
Min nTPM: 7.4
Std nTPM: 4.2
Median nTPM: 17.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 29.2
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 26.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 26.2
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 26.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 24.8
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 24.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 24.3
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 24.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 23.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 23.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 23.7
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Brain - Putamen (basal ganglia)
Average nTPM: 14.9
Samples: 205

Max nTPM: 22.9
Min nTPM: 6.7
Std nTPM: 3.4
Median nTPM: 14.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 22.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 22.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 22.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 21.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 21.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 21.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 21.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 21.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 21.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 21.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 21.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.7
FF:10164-103B2 76 years, female 66.7
Globus pallidus
Scaled Tags Per Million: 46.5
FF:10161-103A8 76 years, female 59.0
FF:10175-103C4 60 years, female 33.9
Nucleus accumbens
Scaled Tags Per Million: 70.8
FF:10037-101F1 23-56 years, mixed 70.8
Putamen
Scaled Tags Per Million: 63.7
FF:10176-103C5 60 years, female 63.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Caudate
nTPM: 39.2
Samples: 4

Max nTPM: 47.2
Min nTPM: 28.2
Sample A Female 28.2
Sample B Female 40.1
Sample C Male 47.2
Sample D Male 41.3
Putamen
nTPM: 40.8
Samples: 4

Max nTPM: 50.8
Min nTPM: 25.2
Sample A Female 25.2
Sample B Female 37.4
Sample C Male 50.8
Sample D Male 49.7
Septum
nTPM: 24.9
Samples: 4

Max nTPM: 29.5
Min nTPM: 21.6
Sample A Female 26.7
Sample B Female 29.5
Sample C Male 21.6
Sample D Male 21.6
Ventral pallidum
nTPM: 32.6
Samples: 4

Max nTPM: 35.5
Min nTPM: 30.0
Sample A Female 31.4
Sample B Female 33.6
Sample C Male 30.0
Sample D Male 35.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.3
Samples: 4

Max nTPM: 65.6
Min nTPM: 52.5
Sample A Male 61.7
Sample B Male 65.6
Sample C Female 52.5
Sample D Female 57.5
Septum
nTPM: 35.4
Samples: 4

Max nTPM: 39.3
Min nTPM: 31.6
Sample A Male 39.3
Sample B Male 31.6
Sample C Female 33.8
Sample D Female 36.7
Ventral forebrain
nTPM: 48.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 45.7
Sample A Male 48.3
Sample B Male 45.7
Sample C Female 49.4
Sample D Female 51.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.5
69028318 Antisense, RP_050316_01_A12, Mouse strain C57BL/6J (56 days, male) 6.9
74076084 Antisense, RP_051219_02_G01, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 2.0
69028318 Antisense, RP_050316_01_A12, Mouse strain C57BL/6J (56 days, male) 3.9
74076084 Antisense, RP_051219_02_G01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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