MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.4 nTPM
HPA:34.4 nTPM
GTEx:33.9 nTPM
FANTOM5:92.6 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:65.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.0
2586 Male, age 75, left hemisphere 38.3
1870 Female, age 42, unknown 34.7
2019 Male, age 18, unknown 34.3
1833 Male, age 53, unknown 33.2
1827 Male, age 72, unknown 32.8
2411 Female, age 72, unknown 32.6
1830 Male, age 51, unknown 31.9
2666 Male, age 74, left hemisphere 31.6
2219 Male, age 76, both hemispheres 30.8
2828 Female, age 72, unknown 29.7
Dorsal raphe nucleus
nTPM: 30.9
2047 Male, age 72, unknown 32.5
1828 Male, age 53, unknown 31.2
2016 Female, age 72, unknown 30.8
2750 Male, age 76, both hemispheres 30.4
2298 Female, age 72, unknown 29.4
Inferior colliculus
nTPM: 32.4
2097 Female, age 72, unknown 35.8
1848 Female, age 42, unknown 31.5
1890 Male, age 53, unknown 31.4
2849 Male, age 72, unknown 30.8
Median raphe nucleus
nTPM: 29.1
2220 Male, age 76, midline 29.1
Pedunculopontine tegmental nucleus
nTPM: 30.5
2334 Male, age 80, both hemispheres 33.0
1921 Female, age 85, both hemispheres 32.2
2338 Male, age 61, both hemispheres 26.5
Periaquaductal grey, anterior
nTPM: 32.6
2502 Female, age 75, unknown 35.1
1795 Male, age 51, unknown 31.4
1947 Male, age 18, unknown 31.3
Periaquaductal grey, dorsal
nTPM: 30.0
1840 Male, age 53, unknown 33.1
2464 Female, age 72, unknown 32.3
1831 Male, age 72, unknown 28.0
2850 Male, age 76, both hemispheres 26.7
Periaquaductal grey, lateral
nTPM: 28.7
2053 Male, age 18, unknown 31.6
2140 Male, age 76, both hemispheres 28.0
2272 Male, age 74, both hemispheres 26.5
Pretectal area
nTPM: 31.9
1944 Female, age 72, unknown 35.6
2007 Male, age 72, unknown 35.1
1817 Female, age 42, unknown 34.5
1816 Male, age 51, unknown 33.4
1815 Male, age 53, unknown 32.9
2825 Male, age 18, unknown 32.0
2224 Female, age 72, unknown 31.3
2407 Male, age 75, both hemispheres 30.7
2667 Female, age 75, unknown 30.6
2273 Male, age 74, both hemispheres 28.4
2316 Male, age 76, right hemisphere 26.8
Red nucleus
nTPM: 34.1
1954 Female, age 42, unknown 37.7
1821 Female, age 72, unknown 36.5
1904 Male, age 53, unknown 35.4
2503 Female, age 72, unknown 35.0
2785 Male, age 18, unknown 35.0
2769 Male, age 72, unknown 34.6
2584 Male, age 75, left hemisphere 34.2
1865 Male, age 51, unknown 33.9
2588 Male, age 74, left hemisphere 33.5
2227 Male, age 72, unknown 32.4
2725 Female, age 75, unknown 31.4
2823 Male, age 76, right hemisphere 29.9
Substantia nigra
nTPM: 34.4
2241 Male, age 72, unknown 37.6
2409 Female, age 72, unknown 37.0
2583 Male, age 75, right hemisphere 35.8
1851 Male, age 51, unknown 35.7
1889 Female, age 72, unknown 35.0
1916 Female, age 42, unknown 34.1
2590 Female, age 75, unknown 33.9
2665 Male, age 74, both hemispheres 32.8
1941 Male, age 53, unknown 32.7
2699 Male, age 18, unknown 29.4
Superior colliculus
nTPM: 32.8
2587 Male, age 74, left hemisphere 35.6
2668 Female, age 75, unknown 34.7
2261 Male, age 18, unknown 33.4
1839 Male, age 51, unknown 33.3
2087 Female, age 72, unknown 33.3
1895 Male, age 76, right hemisphere 32.9
1796 Male, age 53, unknown 32.3
2664 Male, age 75, both hemispheres 32.0
1913 Female, age 42, unknown 30.7
1995 Male, age 72, unknown 30.0
Ventral tegmental area
nTPM: 30.9
2410 Female, age 72, unknown 34.2
2223 Female, age 72, unknown 32.3
1915 Female, age 42, unknown 31.1
2218 Male, age 76, both hemispheres 30.2
1942 Male, age 51, unknown 29.9
2021 Male, age 53, unknown 27.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.9
Samples: 139

Max nTPM: 48.3
Min nTPM: 21.0
Std nTPM: 6.0
Median nTPM: 33.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 48.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 47.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 46.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 46.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 44.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 44.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 44.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 43.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 43.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 43.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.6
FF:10158-103A5 76 years, female 92.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Midbrain
nTPM: 47.6
Samples: 4

Max nTPM: 54.9
Min nTPM: 41.9
Sample A Female 54.9
Sample B Female 41.9
Sample C Male 48.4
Sample D Male 45.1
Periaqueductal gray
nTPM: 40.8
Samples: 3

Max nTPM: 42.3
Min nTPM: 38.6
Sample B Female 42.3
Sample C Male 41.5
Sample D Male 38.6
Substantia nigra
nTPM: 42.9
Samples: 4

Max nTPM: 49.6
Min nTPM: 36.6
Sample A Female 49.6
Sample B Female 36.6
Sample C Male 43.0
Sample D Male 42.2
Superior colliculi
nTPM: 42.3
Samples: 4

Max nTPM: 49.2
Min nTPM: 27.9
Sample A Female 47.8
Sample B Female 27.9
Sample C Male 49.2
Sample D Male 44.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 65.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.0
Samples: 4

Max nTPM: 66.0
Min nTPM: 62.3
Sample A Male 62.3
Sample B Male 66.0
Sample C Female 65.9
Sample D Female 65.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
532691 Antisense, RP_040825_01_E02, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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