BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:15.6 nTPM
HPA:15.6 nTPM
GTEx:16.7 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:14.2 nTPM
Allen mouse:3.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA006717Antibody CAB005427
Glial cells HighMedium
Neuronal cells HighMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.3
2289 Male, age 61, right hemisphere 16.8
2846 Female, age 79, unknown 16.4
2288 Male, age 75, left hemisphere 16.0
2290 Female, age 72, unknown 15.2
1857 Female, age 85, left hemisphere 14.8
1781 Male, age 74, unknown 14.7
1854 Male, age 80, left hemisphere 14.6
2481 Female, age 94, left hemisphere 13.8
Claustrum
nTPM: 15.0
2568 Male, age 61, both hemispheres 16.2
2284 Female, age 91, both hemispheres 16.0
2196 Female, age 79, unknown 15.5
2645 Female, age 72, unknown 15.4
1956 Male, age 74, unknown 15.3
2292 Female, age 85, both hemispheres 15.3
2198 Male, age 80, both hemispheres 14.4
2392 Female, age 94, both hemispheres 13.6
2491 Male, age 75, both hemispheres 13.5
Globus pallidus, externus
nTPM: 14.9
2646 Male, age 61, right hemisphere 18.6
1996 Male, age 80, right hemisphere 14.3
2395 Male, age 75, both hemispheres 14.0
2567 Female, age 72, unknown 14.0
2772 Female, age 79, unknown 13.9
Globus pallidus, internus
nTPM: 14.8
2287 Male, age 75, right hemisphere 15.5
2566 Female, age 72, unknown 15.5
1818 Male, age 74, unknown 15.2
2111 Female, age 85, right hemisphere 15.2
2778 Female, age 91, both hemispheres 15.2
2037 Male, age 80, right hemisphere 13.7
2483 Female, age 94, right hemisphere 13.0
Nucleus accumbens
nTPM: 15.2
2824 Male, age 61, right hemisphere 16.4
2698 Female, age 72, unknown 16.1
2732 Male, age 80, right hemisphere 15.8
1806 Female, age 85, left hemisphere 15.1
1856 Female, age 91, right hemisphere 15.1
2286 Male, age 75, left hemisphere 15.0
1783 Male, age 74, unknown 14.2
2391 Female, age 94, left hemisphere 14.1
Nucleus basalis of Meynert
nTPM: 15.6
2569 Male, age 61, both hemispheres 18.3
2393 Male, age 80, right hemisphere 15.0
2821 Male, age 75, both hemispheres 14.9
2484 Female, age 94, left hemisphere 14.3
Nucleus of the diagonal band
nTPM: 14.5
1979 Male, age 74, unknown 15.5
2029 Male, age 61, right hemisphere 14.8
2195 Female, age 85, both hemispheres 14.5
2775 Male, age 80, right hemisphere 14.2
1812 Female, age 91, both hemispheres 13.4
Olfactory tubercle
nTPM: 14.0
1998 Female, age 91, both hemispheres 14.5
2856 Male, age 75, right hemisphere 14.0
1846 Male, age 80, right hemisphere 13.7
2487 Female, age 94, left hemisphere 13.7
Putamen
nTPM: 15.0
2647 Male, age 75, left hemisphere 16.0
1829 Male, age 74, unknown 15.5
1838 Male, age 80, right hemisphere 15.5
2489 Female, age 72, unknown 15.3
2466 Female, age 79, unknown 15.2
1937 Female, age 91, right hemisphere 13.9
2482 Female, age 94, left hemisphere 13.9
Septal nuclei
nTPM: 14.2
2629 Female, age 94, right hemisphere 15.6
2059 Female, age 85, both hemispheres 14.4
2394 Male, age 61, left hemisphere 14.4
1960 Male, age 74, unknown 14.3
2009 Female, age 91, both hemispheres 13.7
2031 Female, age 72, unknown 13.6
2199 Male, age 80, right hemisphere 13.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.1
Samples: 246

Max nTPM: 22.7
Min nTPM: 8.3
Std nTPM: 2.7
Median nTPM: 16.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 22.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 22.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 22.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 21.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 21.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 21.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 21.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 21.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 20.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 20.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 20.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.7
Samples: 246

Max nTPM: 25.7
Min nTPM: 7.3
Std nTPM: 3.0
Median nTPM: 16.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 25.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 25.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 25.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 24.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 24.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 23.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 23.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 23.2
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 22.9
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 22.5
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 22.4
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Brain - Putamen (basal ganglia)
Average nTPM: 16.5
Samples: 205

Max nTPM: 24.0
Min nTPM: 9.7
Std nTPM: 2.8
Median nTPM: 16.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 24.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 23.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 23.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 23.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 22.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 22.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 22.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 22.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 21.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 21.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 21.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.2
FF:10164-103B2 76 years, female 32.2
Globus pallidus
Scaled Tags Per Million: 23.2
FF:10161-103A8 76 years, female 29.0
FF:10175-103C4 60 years, female 17.3
Nucleus accumbens
Scaled Tags Per Million: 30.7
FF:10037-101F1 23-56 years, mixed 30.7
Putamen
Scaled Tags Per Million: 35.6
FF:10176-103C5 60 years, female 35.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.4
Pig sample Sample description nTPM
Caudate
nTPM: 5.8
Samples: 4

Max nTPM: 6.1
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 5.8
Sample C Male 6.1
Sample D Male 5.7
Putamen
nTPM: 5.9
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.6
Sample A Female 6.4
Sample B Female 4.6
Sample C Male 5.1
Sample D Male 7.3
Septum
nTPM: 5.8
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.0
Sample A Female 6.3
Sample B Female 5.7
Sample C Male 5.0
Sample D Male 6.2
Ventral pallidum
nTPM: 6.4
Samples: 4

Max nTPM: 7.7
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 6.5
Sample C Male 6.8
Sample D Male 7.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.4
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.2
Sample A Male 12.3
Sample B Male 14.2
Sample C Female 11.2
Sample D Female 11.7
Septum
nTPM: 12.4
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.9
Sample A Male 11.9
Sample B Male 12.2
Sample C Female 12.1
Sample D Female 13.4
Ventral forebrain
nTPM: 14.2
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.4
Sample A Male 15.5
Sample B Male 12.4
Sample C Female 15.3
Sample D Female 13.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
69014746 Antisense, RP_050310_01_F05, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 2.8
69014746 Antisense, RP_050310_01_F05, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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