BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:62.7 nTPM
HPA:62.7 nTPM
GTEx:78.7 nTPM
FANTOM5:90.5 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA041981Antibody CAB034929
Glial cells LowNot detected
Neuronal cells MediumLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 57.5
2288 Male, age 75, left hemisphere 61.1
2481 Female, age 94, left hemisphere 60.1
1781 Male, age 74, unknown 58.0
1854 Male, age 80, left hemisphere 56.8
2290 Female, age 72, unknown 56.8
1857 Female, age 85, left hemisphere 56.7
2846 Female, age 79, unknown 55.4
2289 Male, age 61, right hemisphere 55.3
Claustrum
nTPM: 56.2
2198 Male, age 80, both hemispheres 59.1
1956 Male, age 74, unknown 58.2
2284 Female, age 91, both hemispheres 57.7
2491 Male, age 75, both hemispheres 57.6
2392 Female, age 94, both hemispheres 55.9
2568 Male, age 61, both hemispheres 55.6
2645 Female, age 72, unknown 54.1
2196 Female, age 79, unknown 53.9
2292 Female, age 85, both hemispheres 53.7
Globus pallidus, externus
nTPM: 62.7
2772 Female, age 79, unknown 81.5
1996 Male, age 80, right hemisphere 67.5
2395 Male, age 75, both hemispheres 59.3
2646 Male, age 61, right hemisphere 54.0
2567 Female, age 72, unknown 51.1
Globus pallidus, internus
nTPM: 61.5
2287 Male, age 75, right hemisphere 70.8
1818 Male, age 74, unknown 67.7
2483 Female, age 94, right hemisphere 64.4
2778 Female, age 91, both hemispheres 61.1
2037 Male, age 80, right hemisphere 59.5
2111 Female, age 85, right hemisphere 54.3
2566 Female, age 72, unknown 53.0
Nucleus accumbens
nTPM: 57.5
2286 Male, age 75, left hemisphere 62.8
1856 Female, age 91, right hemisphere 61.0
2824 Male, age 61, right hemisphere 57.3
2391 Female, age 94, left hemisphere 57.2
1783 Male, age 74, unknown 56.8
1806 Female, age 85, left hemisphere 55.7
2698 Female, age 72, unknown 54.8
2732 Male, age 80, right hemisphere 54.3
Nucleus basalis of Meynert
nTPM: 54.8
2484 Female, age 94, left hemisphere 55.5
2821 Male, age 75, both hemispheres 54.9
2569 Male, age 61, both hemispheres 54.7
2393 Male, age 80, right hemisphere 54.0
Nucleus of the diagonal band
nTPM: 58.7
1812 Female, age 91, both hemispheres 64.7
2029 Male, age 61, right hemisphere 61.2
2775 Male, age 80, right hemisphere 60.0
2195 Female, age 85, both hemispheres 54.7
1979 Male, age 74, unknown 52.8
Olfactory tubercle
nTPM: 58.6
1998 Female, age 91, both hemispheres 61.2
1846 Male, age 80, right hemisphere 58.4
2487 Female, age 94, left hemisphere 57.8
2856 Male, age 75, right hemisphere 57.0
Putamen
nTPM: 56.5
1937 Female, age 91, right hemisphere 60.0
2482 Female, age 94, left hemisphere 57.2
1838 Male, age 80, right hemisphere 57.0
2466 Female, age 79, unknown 57.0
1829 Male, age 74, unknown 56.4
2647 Male, age 75, left hemisphere 56.1
2489 Female, age 72, unknown 51.7
Septal nuclei
nTPM: 56.5
2031 Female, age 72, unknown 63.4
2009 Female, age 91, both hemispheres 60.2
1960 Male, age 74, unknown 58.3
2629 Female, age 94, right hemisphere 54.5
2394 Male, age 61, left hemisphere 54.2
2199 Male, age 80, right hemisphere 52.6
2059 Female, age 85, both hemispheres 52.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 78.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 68.3
Samples: 246

Max nTPM: 118.5
Min nTPM: 40.3
Std nTPM: 13.7
Median nTPM: 65.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 118.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 117.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 107.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 101.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 100.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 99.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 97.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 97.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 96.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 96.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 96.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 67.8
Samples: 246

Max nTPM: 166.4
Min nTPM: 38.3
Std nTPM: 16.4
Median nTPM: 63.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 166.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 148.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 136.7
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 111.7
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 110.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 110.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 110.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 108.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 107.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 100.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 97.5
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Brain - Putamen (basal ganglia)
Average nTPM: 78.7
Samples: 205

Max nTPM: 139.5
Min nTPM: 40.9
Std nTPM: 16.4
Median nTPM: 76.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 139.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 128.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 128.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 118.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 118.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 117.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 113.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 110.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 110.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 110.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 109.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.0
FF:10164-103B2 76 years, female 63.0
Globus pallidus
Scaled Tags Per Million: 69.1
FF:10161-103A8 76 years, female 72.8
FF:10175-103C4 60 years, female 65.5
Nucleus accumbens
Scaled Tags Per Million: 77.2
FF:10037-101F1 23-56 years, mixed 77.2
Putamen
Scaled Tags Per Million: 90.5
FF:10176-103C5 60 years, female 90.5

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The Human Protein Atlas

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