MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.5 nTPM
HPA:37.5 nTPM
GTEx:22.5 nTPM
FANTOM5:121.0 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:12.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.4
2666 Male, age 74, left hemisphere 40.3
2019 Male, age 18, unknown 38.7
1830 Male, age 51, unknown 30.2
2828 Female, age 72, unknown 30.2
2586 Male, age 75, left hemisphere 27.7
1833 Male, age 53, unknown 26.5
1870 Female, age 42, unknown 20.3
1827 Male, age 72, unknown 20.1
2411 Female, age 72, unknown 20.0
2219 Male, age 76, both hemispheres 19.7
Dorsal raphe nucleus
nTPM: 28.5
2016 Female, age 72, unknown 33.8
2750 Male, age 76, both hemispheres 29.7
1828 Male, age 53, unknown 29.5
2047 Male, age 72, unknown 25.1
2298 Female, age 72, unknown 24.2
Inferior colliculus
nTPM: 23.5
1890 Male, age 53, unknown 25.1
2097 Female, age 72, unknown 25.1
2849 Male, age 72, unknown 23.6
1848 Female, age 42, unknown 20.5
Median raphe nucleus
nTPM: 27.8
2220 Male, age 76, midline 27.8
Pedunculopontine tegmental nucleus
nTPM: 32.9
2338 Male, age 61, both hemispheres 48.9
2334 Male, age 80, both hemispheres 29.0
1921 Female, age 85, both hemispheres 20.8
Periaquaductal grey, anterior
nTPM: 22.5
1795 Male, age 51, unknown 23.5
1947 Male, age 18, unknown 22.1
2502 Female, age 75, unknown 21.7
Periaquaductal grey, dorsal
nTPM: 29.1
2850 Male, age 76, both hemispheres 36.6
1831 Male, age 72, unknown 34.5
1840 Male, age 53, unknown 24.0
2464 Female, age 72, unknown 21.3
Periaquaductal grey, lateral
nTPM: 31.0
2140 Male, age 76, both hemispheres 35.6
2272 Male, age 74, both hemispheres 29.1
2053 Male, age 18, unknown 28.3
Pretectal area
nTPM: 29.9
2316 Male, age 76, right hemisphere 43.4
2407 Male, age 75, both hemispheres 40.0
1817 Female, age 42, unknown 34.7
2007 Male, age 72, unknown 32.3
1815 Male, age 53, unknown 31.4
2273 Male, age 74, both hemispheres 30.2
1944 Female, age 72, unknown 27.7
1816 Male, age 51, unknown 23.5
2825 Male, age 18, unknown 22.4
2667 Female, age 75, unknown 22.2
2224 Female, age 72, unknown 20.8
Red nucleus
nTPM: 30.5
2584 Male, age 75, left hemisphere 39.2
1865 Male, age 51, unknown 37.4
1904 Male, age 53, unknown 36.3
2785 Male, age 18, unknown 35.0
2725 Female, age 75, unknown 30.7
2769 Male, age 72, unknown 30.1
1954 Female, age 42, unknown 29.7
2227 Male, age 72, unknown 28.8
2503 Female, age 72, unknown 28.2
1821 Female, age 72, unknown 23.7
2823 Male, age 76, right hemisphere 23.6
2588 Male, age 74, left hemisphere 23.4
Substantia nigra
nTPM: 37.5
2665 Male, age 74, both hemispheres 53.6
2590 Female, age 75, unknown 47.6
2699 Male, age 18, unknown 44.0
2583 Male, age 75, right hemisphere 38.9
2409 Female, age 72, unknown 36.5
1851 Male, age 51, unknown 34.5
2241 Male, age 72, unknown 33.2
1941 Male, age 53, unknown 29.7
1889 Female, age 72, unknown 29.4
1916 Female, age 42, unknown 27.5
Superior colliculus
nTPM: 28.1
2587 Male, age 74, left hemisphere 36.6
1913 Female, age 42, unknown 36.0
1995 Male, age 72, unknown 34.7
2664 Male, age 75, both hemispheres 33.4
2087 Female, age 72, unknown 28.2
2668 Female, age 75, unknown 27.9
1839 Male, age 51, unknown 23.9
1796 Male, age 53, unknown 21.3
1895 Male, age 76, right hemisphere 20.3
2261 Male, age 18, unknown 19.0
Ventral tegmental area
nTPM: 31.6
2021 Male, age 53, unknown 40.3
1942 Male, age 51, unknown 31.9
2218 Male, age 76, both hemispheres 31.7
2410 Female, age 72, unknown 30.6
2223 Female, age 72, unknown 29.8
1915 Female, age 42, unknown 25.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.5
Samples: 139

Max nTPM: 71.0
Min nTPM: 4.7
Std nTPM: 11.8
Median nTPM: 20.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 71.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 70.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 63.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 62.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 54.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 54.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 54.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 50.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 40.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 40.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 40.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.0
FF:10158-103A5 76 years, female 121.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Midbrain
nTPM: 10.6
Samples: 4

Max nTPM: 14.3
Min nTPM: 6.8
Sample A Female 14.3
Sample B Female 11.3
Sample C Male 10.1
Sample D Male 6.8
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 11.6
Min nTPM: 7.8
Sample B Female 10.2
Sample C Male 11.6
Sample D Male 7.8
Substantia nigra
nTPM: 12.3
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.5
Sample A Female 12.5
Sample B Female 14.2
Sample C Male 10.5
Sample D Male 11.8
Superior colliculi
nTPM: 9.9
Samples: 4

Max nTPM: 11.1
Min nTPM: 7.4
Sample A Female 10.9
Sample B Female 11.1
Sample C Male 7.4
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 13.5
Min nTPM: 11.6
Sample A Male 11.6
Sample B Male 11.9
Sample C Female 12.6
Sample D Female 13.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74658241 Antisense, RP_060220_02_D07, Mouse strain C57BL/6J (56 days, male) 0.2
68161472 Antisense, RP_041122_01_E02, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.