MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.6 nTPM
HPA:86.6 nTPM
GTEx:97.7 nTPM
FANTOM5:98.1 Scaled Tags Per Million
Pig:65.7 nTPM
Mouse:85.1 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.3
1870 Female, age 42, unknown 87.4
2411 Female, age 72, unknown 86.1
1833 Male, age 53, unknown 83.2
1827 Male, age 72, unknown 82.6
2666 Male, age 74, left hemisphere 82.3
2828 Female, age 72, unknown 81.7
1830 Male, age 51, unknown 80.9
2019 Male, age 18, unknown 80.1
2219 Male, age 76, both hemispheres 79.4
2586 Male, age 75, left hemisphere 79.3
Dorsal raphe nucleus
nTPM: 86.6
2016 Female, age 72, unknown 87.7
2298 Female, age 72, unknown 87.5
2750 Male, age 76, both hemispheres 86.5
2047 Male, age 72, unknown 85.7
1828 Male, age 53, unknown 85.6
Inferior colliculus
nTPM: 84.8
1890 Male, age 53, unknown 87.7
2097 Female, age 72, unknown 85.7
1848 Female, age 42, unknown 83.0
2849 Male, age 72, unknown 82.8
Median raphe nucleus
nTPM: 81.8
2220 Male, age 76, midline 81.8
Pedunculopontine tegmental nucleus
nTPM: 84.0
2334 Male, age 80, both hemispheres 86.0
1921 Female, age 85, both hemispheres 83.6
2338 Male, age 61, both hemispheres 82.4
Periaquaductal grey, anterior
nTPM: 81.9
1947 Male, age 18, unknown 82.8
2502 Female, age 75, unknown 81.9
1795 Male, age 51, unknown 81.0
Periaquaductal grey, dorsal
nTPM: 85.9
2850 Male, age 76, both hemispheres 89.9
1840 Male, age 53, unknown 86.7
2464 Female, age 72, unknown 83.6
1831 Male, age 72, unknown 83.3
Periaquaductal grey, lateral
nTPM: 83.5
2140 Male, age 76, both hemispheres 85.2
2053 Male, age 18, unknown 84.4
2272 Male, age 74, both hemispheres 80.8
Pretectal area
nTPM: 82.6
2224 Female, age 72, unknown 87.0
2667 Female, age 75, unknown 83.9
1817 Female, age 42, unknown 83.7
2825 Male, age 18, unknown 83.5
2273 Male, age 74, both hemispheres 83.4
2007 Male, age 72, unknown 82.6
1815 Male, age 53, unknown 82.4
2316 Male, age 76, right hemisphere 82.0
1816 Male, age 51, unknown 80.9
1944 Female, age 72, unknown 80.4
2407 Male, age 75, both hemispheres 78.7
Red nucleus
nTPM: 84.9
1821 Female, age 72, unknown 89.9
2503 Female, age 72, unknown 89.2
1865 Male, age 51, unknown 88.1
1954 Female, age 42, unknown 86.8
2725 Female, age 75, unknown 86.4
1904 Male, age 53, unknown 85.6
2769 Male, age 72, unknown 85.4
2227 Male, age 72, unknown 85.1
2823 Male, age 76, right hemisphere 84.2
2588 Male, age 74, left hemisphere 82.5
2785 Male, age 18, unknown 80.5
2584 Male, age 75, left hemisphere 75.5
Substantia nigra
nTPM: 86.0
2409 Female, age 72, unknown 92.3
2699 Male, age 18, unknown 91.7
1851 Male, age 51, unknown 88.1
2241 Male, age 72, unknown 87.7
2665 Male, age 74, both hemispheres 87.2
1916 Female, age 42, unknown 85.5
2590 Female, age 75, unknown 83.2
1889 Female, age 72, unknown 82.7
1941 Male, age 53, unknown 81.9
2583 Male, age 75, right hemisphere 79.4
Superior colliculus
nTPM: 82.2
2587 Male, age 74, left hemisphere 86.6
1995 Male, age 72, unknown 84.1
1913 Female, age 42, unknown 83.8
1895 Male, age 76, right hemisphere 83.7
1839 Male, age 51, unknown 81.6
2668 Female, age 75, unknown 81.6
2261 Male, age 18, unknown 80.7
2087 Female, age 72, unknown 80.2
1796 Male, age 53, unknown 80.0
2664 Male, age 75, both hemispheres 79.4
Ventral tegmental area
nTPM: 84.7
2021 Male, age 53, unknown 86.5
2410 Female, age 72, unknown 86.2
1915 Female, age 42, unknown 85.7
2223 Female, age 72, unknown 84.9
1942 Male, age 51, unknown 84.0
2218 Male, age 76, both hemispheres 81.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.7
Samples: 139

Max nTPM: 186.5
Min nTPM: 65.9
Std nTPM: 22.7
Median nTPM: 93.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 186.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 167.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 155.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 151.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 147.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 147.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 141.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 139.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 138.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 135.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 134.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.1
FF:10158-103A5 76 years, female 98.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.7
Pig sample Sample description nTPM
Midbrain
nTPM: 65.7
Samples: 4

Max nTPM: 162.7
Min nTPM: 28.9
Sample A Female 40.6
Sample B Female 30.6
Sample C Male 162.7
Sample D Male 28.9
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 30.2
Min nTPM: 28.1
Sample B Female 28.1
Sample C Male 28.9
Sample D Male 30.2
Substantia nigra
nTPM: 32.5
Samples: 4

Max nTPM: 36.6
Min nTPM: 27.1
Sample A Female 36.6
Sample B Female 27.1
Sample C Male 34.1
Sample D Male 32.1
Superior colliculi
nTPM: 51.2
Samples: 4

Max nTPM: 120.2
Min nTPM: 23.5
Sample A Female 31.3
Sample B Female 23.5
Sample C Male 120.2
Sample D Male 29.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.1
Samples: 4

Max nTPM: 89.9
Min nTPM: 80.5
Sample A Male 84.8
Sample B Male 80.5
Sample C Female 85.3
Sample D Female 89.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
294043 Antisense, RP_040617_02_F01, Mouse strain C57BL/6J (56 days, male) 1.8
67881553 Antisense, RP_041018_01_E10, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.