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SLC24A1
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  • SLC24A1
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Low
Limiting membrane: Not detected
Nerve fiber layer: Low
Outer plexiform layer: Low
Photoreceptor cells: Medium
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:193.5 nTPM
GTEx:193.5 nTPM
FANTOM5:156.1 Scaled Tags Per Million
Pig:144.7 nTPM
Mouse:621.8 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA039370
Pigment epithelial cells Not detected
Photoreceptor cells Medium
Limiting membrane Not detected
Outer plexiform layer Low
Inner nuclear layer Not detected
Inner plexiform layer Low
Ganglion cells Not detected
Nerve fiber layer Low

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 193.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 193.5
Samples: 105

Max nTPM: 321.3
Min nTPM: 59.5
Std nTPM: 53.7
Median nTPM:
415_1 77 years, female 321.3
352_1 62 years, male 300.3
386_1 76 years, male 288.4
466_1 57 years, female 281.7
229_1 69 years, female 281.0
9_1 66 years, female 277.8
172_1 72 years, female 277.4
162_1 79 years, female 267.9
6_1 73 years, female 267.3
126_1 63 years, male 265.1
414_1 84 years, female 261.7
246_1 77 years, male 256.0
32_1 67 years, male 254.3
324_1 76 years, male 253.2
251_1 78 years, male 252.9
490_1 67 years, female 250.2
468_1 89 years, male 247.9
425_1 59 years, female 247.1
149_1 88 years, male 246.2
43_1 64 years, female 243.9
265_1 87 years, male 243.4
142_1 61 years, female 241.2
286_1 68 years, female 238.6
526_1 61 years, male 237.6
480_1 63 years, male 235.6
115_1 83 years, male 234.8
389_1 86 years, female 234.1
81_1 67 years, male 233.0
316_1 62 years, male 230.9
292_1 71 years, male 230.1
217_1 76 years, male 228.9
177_1 74 years, male 223.6
153_1 70 years, female 222.5
413_1 59 years, female 221.9
354_1 81 years, female 220.5
376_1 75 years, female 220.2
189_1 76 years, male 217.1
355_1 70 years, female 214.8
377_1 82 years, female 212.6
499_1 55 years, female 212.4
396_1 62 years, male 210.8
375_1 74 years, female 210.3
243_1 75 years, male 208.7
266_1 85 years, male 208.4
315_1 62 years, female 205.9
405_1 91 years, male 204.7
319_1 81 years, male 203.7
394_1 75 years, female 203.2
503_1 68 years, male 201.4
447_1 81 years, male 201.1
163_1 78 years, male 198.8
18_1 88 years, male 198.7
117_1 61 years, male 196.1
349_1 83 years, male 195.0
404_1 82 years, female 193.6
35_1 74 years, female 190.3
335_1 73 years, female 190.2
491_1 89 years, female 189.9
518_1 75 years, female 188.2
379_1 60 years, male 187.4
254_1 77 years, female 186.3
348_1 84 years, male 184.3
313_1 79 years, female 183.4
237_1 82 years, male 182.2
350_1 84 years, female 180.8
356_1 87 years, female 179.2
321_1 62 years, female 177.1
406_1 79 years, male 176.3
517_1 88 years, male 174.7
353_1 82 years, female 172.0
347_1 72 years, male 168.5
291_1 76 years, male 168.3
384_1 83 years, male 167.6
17_1 71 years, male 162.5
89_1 63 years, male 162.1
264_1 73 years, female 160.6
320_1 89 years, female 160.2
318_1 68 years, male 158.3
288_1 66 years, female 155.3
307_1 66 years, female 153.4
99_1 64 years, male 152.0
293_1 68 years, female 151.2
2_1 77 years, female 149.3
109_1 81 years, female 146.4
137_1 83 years, male 142.4
145_1 84 years, male 142.1
120_1 70 years, female 141.6
311_1 78 years, male 141.1
139_1 64 years, female 136.5
218_1 71 years, female 130.2
4_1 88 years, female 129.6
351_1 91 years, male 128.1
501_1 88 years, male 126.3
42_1 85 years, male 124.5
322_1 76 years, male 121.6
119_1 70 years, female 118.9
314_1 67 years, male 115.5
173_1 67 years, male 111.0
317_1 60 years, male 102.3
295_1 61 years, female 99.9
506_1 65 years, male 97.4
495_1 57 years, female 95.0
452_1 88 years, female 87.5
308_1 70 years, female 67.8
41_1 94 years, female 59.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 156.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 156.1
FF:10030-101E3 24-65 years, mixed 156.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 144.7
Pig sample Sample description nTPM
Retina
nTPM: 144.7
Samples: 4

Max nTPM: 171.6
Min nTPM: 129.7
Sample A Female 143.9
Sample B Female 133.7
Sample C Male 171.6
Sample D Male 129.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 621.8
Mouse sample Sample description nTPM
Retina
nTPM: 621.8
Samples: 4

Max nTPM: 673.5
Min nTPM: 557.6
Sample A Male 612.8
Sample B Male 643.1
Sample C Female 557.6
Sample D Female 673.5

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by the Knut & Alice Wallenberg Foundation.