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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:48.0 nTPM
GTEx:60.5 nTPM
FANTOM5:154.0 Scaled Tags Per Million
Pig:71.9 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 48.0
Sample id Sample description nTPM
Putamen
nTPM: 48.0
2482 Female, age 94, left hemisphere 54.1
1937 Female, age 91, right hemisphere 52.0
1838 Male, age 80, right hemisphere 51.4
2466 Female, age 79, unknown 51.0
1829 Male, age 74, unknown 46.8
2489 Female, age 72, unknown 41.2
2647 Male, age 75, left hemisphere 39.4

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.5
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 60.5
Samples: 205

Max nTPM: 101.5
Min nTPM: 26.1
Std nTPM: 11.9
Median nTPM: 60.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 101.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 99.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 89.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 86.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 83.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 82.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 81.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 80.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 80.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 79.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 79.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 78.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 78.4
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 78.4
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 78.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 78.1
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 77.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 77.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 76.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 75.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 73.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 73.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 73.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 73.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 73.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 72.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 72.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 71.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 71.7
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 71.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 70.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 70.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 70.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 70.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 70.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 69.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 69.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 69.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 69.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 69.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 69.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 69.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 69.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 68.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 68.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 68.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 68.4
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 68.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 68.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 68.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 67.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 67.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 67.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 67.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 67.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 67.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 67.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 67.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 67.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 66.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 66.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 66.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 66.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 66.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 66.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 66.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 66.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 66.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 66.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 66.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 65.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 65.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 65.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 65.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 65.3
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 64.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 64.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 64.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 64.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 64.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 64.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 64.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 63.3
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 63.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 62.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 62.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 62.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 62.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 62.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 62.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 62.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 62.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 62.2
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 62.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 61.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 61.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 61.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 61.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 61.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 61.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 61.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 61.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 60.6
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 60.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 60.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 60.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 60.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 60.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 59.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 59.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 59.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 59.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 59.1
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 59.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 59.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 58.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 58.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 58.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 58.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 58.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 58.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 58.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 58.0
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 57.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 57.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 57.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 57.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 57.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 57.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 57.0
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 56.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 56.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 56.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 56.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 56.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 56.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 56.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 56.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 55.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 55.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 55.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 55.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 54.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 54.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 54.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 54.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 54.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 54.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 54.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 54.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 53.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 53.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 53.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 53.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 53.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 52.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 52.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 52.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 52.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 52.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 52.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 51.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 51.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 51.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 50.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 50.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 50.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 49.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 49.3
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 48.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 48.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 48.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 48.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 48.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 47.7
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 47.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 47.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 47.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 46.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 46.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 46.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 45.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 45.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 45.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 45.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 44.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 44.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 44.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 43.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 43.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 42.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 42.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 42.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 41.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 41.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 39.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 39.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 36.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 36.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 35.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 35.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 34.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 34.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 33.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 26.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 154.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 154.0
FF:10176-103C5 60 years, female 154.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 71.9
Pig sample Sample description nTPM
Putamen
nTPM: 71.9
Samples: 4

Max nTPM: 96.1
Min nTPM: 61.5
Sample A Female 61.5
Sample B Female 63.0
Sample C Male 96.1
Sample D Male 66.8

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