MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.0 nTPM
HPA:44.0 nTPM
GTEx:42.4 nTPM
FANTOM5:52.7 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:25.7 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.2
1870 Female, age 42, unknown 44.2
2586 Male, age 75, left hemisphere 43.9
2666 Male, age 74, left hemisphere 43.6
2411 Female, age 72, unknown 42.9
2828 Female, age 72, unknown 42.6
1827 Male, age 72, unknown 42.0
2019 Male, age 18, unknown 41.8
1830 Male, age 51, unknown 40.6
1833 Male, age 53, unknown 40.5
2219 Male, age 76, both hemispheres 39.6
Dorsal raphe nucleus
nTPM: 42.6
2298 Female, age 72, unknown 45.0
1828 Male, age 53, unknown 43.2
2750 Male, age 76, both hemispheres 43.1
2047 Male, age 72, unknown 41.9
2016 Female, age 72, unknown 39.8
Inferior colliculus
nTPM: 40.7
2097 Female, age 72, unknown 42.2
1890 Male, age 53, unknown 40.3
2849 Male, age 72, unknown 40.3
1848 Female, age 42, unknown 40.2
Median raphe nucleus
nTPM: 44.0
2220 Male, age 76, midline 44.0
Pedunculopontine tegmental nucleus
nTPM: 42.9
2338 Male, age 61, both hemispheres 44.7
2334 Male, age 80, both hemispheres 42.8
1921 Female, age 85, both hemispheres 41.4
Periaquaductal grey, anterior
nTPM: 43.4
1947 Male, age 18, unknown 44.4
2502 Female, age 75, unknown 42.9
1795 Male, age 51, unknown 42.8
Periaquaductal grey, dorsal
nTPM: 40.4
2850 Male, age 76, both hemispheres 41.4
1840 Male, age 53, unknown 40.3
2464 Female, age 72, unknown 40.2
1831 Male, age 72, unknown 39.8
Periaquaductal grey, lateral
nTPM: 41.2
2272 Male, age 74, both hemispheres 41.9
2140 Male, age 76, both hemispheres 41.1
2053 Male, age 18, unknown 40.6
Pretectal area
nTPM: 42.7
1816 Male, age 51, unknown 43.7
2224 Female, age 72, unknown 43.6
2007 Male, age 72, unknown 43.5
1817 Female, age 42, unknown 43.1
2407 Male, age 75, both hemispheres 43.0
2825 Male, age 18, unknown 43.0
2667 Female, age 75, unknown 42.8
1944 Female, age 72, unknown 42.7
1815 Male, age 53, unknown 41.8
2273 Male, age 74, both hemispheres 41.6
2316 Male, age 76, right hemisphere 40.6
Red nucleus
nTPM: 42.4
2503 Female, age 72, unknown 43.6
2584 Male, age 75, left hemisphere 43.4
2785 Male, age 18, unknown 43.2
1904 Male, age 53, unknown 42.9
2725 Female, age 75, unknown 42.9
2227 Male, age 72, unknown 42.7
2769 Male, age 72, unknown 42.7
1865 Male, age 51, unknown 42.3
1821 Female, age 72, unknown 42.1
1954 Female, age 42, unknown 41.8
2823 Male, age 76, right hemisphere 41.1
2588 Male, age 74, left hemisphere 40.5
Substantia nigra
nTPM: 42.3
1916 Female, age 42, unknown 44.8
2665 Male, age 74, both hemispheres 44.1
1851 Male, age 51, unknown 43.7
1889 Female, age 72, unknown 43.1
2241 Male, age 72, unknown 42.9
2583 Male, age 75, right hemisphere 42.9
1941 Male, age 53, unknown 42.0
2590 Female, age 75, unknown 41.7
2699 Male, age 18, unknown 40.2
2409 Female, age 72, unknown 37.8
Superior colliculus
nTPM: 42.1
1796 Male, age 53, unknown 44.4
2261 Male, age 18, unknown 43.2
1913 Female, age 42, unknown 43.0
2087 Female, age 72, unknown 42.8
2668 Female, age 75, unknown 42.4
1995 Male, age 72, unknown 41.8
2587 Male, age 74, left hemisphere 41.4
1839 Male, age 51, unknown 41.2
2664 Male, age 75, both hemispheres 41.2
1895 Male, age 76, right hemisphere 40.1
Ventral tegmental area
nTPM: 41.8
1915 Female, age 42, unknown 43.0
1942 Male, age 51, unknown 42.5
2021 Male, age 53, unknown 41.8
2223 Female, age 72, unknown 41.8
2218 Male, age 76, both hemispheres 41.4
2410 Female, age 72, unknown 40.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.4
Samples: 139

Max nTPM: 87.3
Min nTPM: 24.6
Std nTPM: 10.0
Median nTPM: 40.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 87.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 70.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 64.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 62.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 62.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 59.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 59.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 58.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 58.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 57.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.7
FF:10158-103A5 76 years, female 52.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 32.3
Min nTPM: 15.7
Sample A Female 32.3
Sample B Female 18.4
Sample C Male 17.4
Sample D Male 15.7
Periaqueductal gray
nTPM: 14.7
Samples: 3

Max nTPM: 15.7
Min nTPM: 12.9
Sample B Female 15.7
Sample C Male 15.5
Sample D Male 12.9
Substantia nigra
nTPM: 18.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 15.6
Sample A Female 23.2
Sample B Female 16.3
Sample C Male 15.6
Sample D Male 17.9
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 22.7
Min nTPM: 16.9
Sample A Female 22.7
Sample B Female 20.6
Sample C Male 19.6
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 27.3
Min nTPM: 23.1
Sample A Male 27.3
Sample B Male 26.3
Sample C Female 23.1
Sample D Female 26.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
71280994 Antisense, RP_050818_02_A04, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.