We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SRI
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SRI
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:155.5 nTPM
HPA:155.5 nTPM
GTEx:160.0 nTPM
FANTOM5:212.5 Scaled Tags Per Million
Pig:111.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 155.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 154.1
1981 Female, age 72, midline 189.9
2048 Male, age 55, midline 167.8
2194 Female, age 79, both hemispheres 140.8
2816 Male, age 47, midline 139.0
2565 Male, age 75, midline 133.0
Cervical spinal cord, dorsal horn
nTPM: 155.5
2173 Female, age 72, unknown 181.8
2296 Male, age 66, both hemispheres 170.8
2069 Male, age 47, both hemispheres 163.0
1877 Male, age 55, unknown 145.9
2721 Male, age 90, both hemispheres 141.9
2297 Male, age 75, both hemispheres 129.7
Cervical spinal cord, ventral horn
nTPM: 149.7
2098 Female, age 72, unknown 209.6
2809 Male, age 90, both hemispheres 150.1
2295 Male, age 66, both hemispheres 145.6
2068 Male, age 55, unknown 135.1
2480 Male, age 75, both hemispheres 133.0
2820 Female, age 79, both hemispheres 124.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 160.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 160.0
Samples: 159

Max nTPM: 247.7
Min nTPM: 106.2
Std nTPM: 30.3
Median nTPM: 158.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 247.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 243.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 242.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 228.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 224.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 220.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 219.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 217.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 215.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 214.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 211.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 206.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 205.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 205.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 203.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 202.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 200.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 200.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 198.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 194.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 193.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 191.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 191.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 191.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 191.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 189.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 189.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 188.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 188.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 187.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 186.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 185.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 184.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 182.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 180.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 179.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 179.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 179.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 179.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 178.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 177.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 177.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 176.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 176.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 174.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 174.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 174.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 173.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 173.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 172.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 172.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 172.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 172.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 171.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 170.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 170.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 168.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 166.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 166.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 166.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 164.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 164.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 164.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 164.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 164.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 164.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 164.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 162.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 162.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 162.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 161.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 161.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 160.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 160.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 160.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 160.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 159.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 159.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 158.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 158.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 158.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 158.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 157.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 157.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 156.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 156.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 156.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 156.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 153.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 153.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 152.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 152.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 152.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 151.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 151.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 150.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 150.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 150.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 150.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 149.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 149.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 149.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 147.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 147.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 146.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 146.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 146.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 144.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 143.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 143.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 142.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 141.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 139.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 139.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 137.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 137.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 137.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 137.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 136.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 136.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 135.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 135.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 134.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 134.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 134.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 134.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 134.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 133.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 133.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 133.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 132.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 132.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 132.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 131.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 131.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 130.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 130.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 125.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 124.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 124.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 122.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 121.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 120.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 117.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 117.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 116.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 116.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 114.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 114.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 114.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 114.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 113.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 113.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 112.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 112.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 108.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 106.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 106.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 106.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 212.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 212.5
FF:10159-103A6 76 years, female 216.3
FF:10181-103D1 60 years, female 208.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 107.8
Samples: 4

Max nTPM: 141.4
Min nTPM: 92.8
Sample A Female 92.9
Sample B Female 104.1
Sample C Male 141.4
Sample D Male 92.8
Ventral spinal cord
nTPM: 111.2
Samples: 4

Max nTPM: 133.8
Min nTPM: 98.5
Sample A Female 98.5
Sample B Female 107.8
Sample C Male 104.6
Sample D Male 133.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.