MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:150.6 nTPM
HPA:150.6 nTPM
GTEx:199.3 nTPM
FANTOM5:141.1 Scaled Tags Per Million
Pig:86.0 nTPM
Mouse:52.5 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 150.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 128.6
1827 Male, age 72, unknown 137.7
1870 Female, age 42, unknown 137.3
2411 Female, age 72, unknown 137.2
2828 Female, age 72, unknown 131.8
1833 Male, age 53, unknown 128.6
1830 Male, age 51, unknown 126.3
2019 Male, age 18, unknown 125.2
2219 Male, age 76, both hemispheres 124.1
2586 Male, age 75, left hemisphere 123.0
2666 Male, age 74, left hemisphere 114.8
Dorsal raphe nucleus
nTPM: 150.6
2298 Female, age 72, unknown 168.1
2016 Female, age 72, unknown 155.1
1828 Male, age 53, unknown 149.8
2047 Male, age 72, unknown 144.3
2750 Male, age 76, both hemispheres 135.4
Inferior colliculus
nTPM: 143.0
2097 Female, age 72, unknown 155.1
1848 Female, age 42, unknown 141.0
1890 Male, age 53, unknown 139.2
2849 Male, age 72, unknown 136.9
Median raphe nucleus
nTPM: 135.3
2220 Male, age 76, midline 135.3
Pedunculopontine tegmental nucleus
nTPM: 140.0
2334 Male, age 80, both hemispheres 145.6
1921 Female, age 85, both hemispheres 139.5
2338 Male, age 61, both hemispheres 135.0
Periaquaductal grey, anterior
nTPM: 131.4
1795 Male, age 51, unknown 134.5
1947 Male, age 18, unknown 132.0
2502 Female, age 75, unknown 127.8
Periaquaductal grey, dorsal
nTPM: 145.9
2850 Male, age 76, both hemispheres 155.9
1840 Male, age 53, unknown 154.7
2464 Female, age 72, unknown 137.4
1831 Male, age 72, unknown 135.7
Periaquaductal grey, lateral
nTPM: 146.1
2140 Male, age 76, both hemispheres 149.7
2272 Male, age 74, both hemispheres 148.7
2053 Male, age 18, unknown 139.9
Pretectal area
nTPM: 139.9
2273 Male, age 74, both hemispheres 158.9
2224 Female, age 72, unknown 154.9
1944 Female, age 72, unknown 144.1
2825 Male, age 18, unknown 142.7
2667 Female, age 75, unknown 141.6
1817 Female, age 42, unknown 139.5
1816 Male, age 51, unknown 137.3
1815 Male, age 53, unknown 135.4
2316 Male, age 76, right hemisphere 132.6
2007 Male, age 72, unknown 130.8
2407 Male, age 75, both hemispheres 121.6
Red nucleus
nTPM: 130.4
1821 Female, age 72, unknown 145.1
2503 Female, age 72, unknown 139.4
2725 Female, age 75, unknown 136.6
1954 Female, age 42, unknown 135.4
2227 Male, age 72, unknown 134.6
2769 Male, age 72, unknown 132.6
1865 Male, age 51, unknown 129.4
2823 Male, age 76, right hemisphere 128.7
1904 Male, age 53, unknown 127.6
2785 Male, age 18, unknown 121.5
2588 Male, age 74, left hemisphere 119.4
2584 Male, age 75, left hemisphere 115.0
Substantia nigra
nTPM: 140.4
2699 Male, age 18, unknown 153.4
1916 Female, age 42, unknown 147.6
1851 Male, age 51, unknown 146.0
2241 Male, age 72, unknown 143.5
2590 Female, age 75, unknown 141.0
1889 Female, age 72, unknown 139.9
1941 Male, age 53, unknown 137.4
2665 Male, age 74, both hemispheres 135.1
2583 Male, age 75, right hemisphere 131.3
2409 Female, age 72, unknown 128.9
Superior colliculus
nTPM: 133.7
2587 Male, age 74, left hemisphere 140.4
1995 Male, age 72, unknown 139.1
2261 Male, age 18, unknown 137.1
2087 Female, age 72, unknown 136.5
1796 Male, age 53, unknown 135.3
1895 Male, age 76, right hemisphere 133.0
1913 Female, age 42, unknown 132.7
1839 Male, age 51, unknown 131.2
2668 Female, age 75, unknown 127.7
2664 Male, age 75, both hemispheres 124.3
Ventral tegmental area
nTPM: 140.8
2410 Female, age 72, unknown 147.2
1915 Female, age 42, unknown 144.4
2021 Male, age 53, unknown 142.4
1942 Male, age 51, unknown 138.8
2223 Female, age 72, unknown 137.7
2218 Male, age 76, both hemispheres 134.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 199.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 199.3
Samples: 139

Max nTPM: 389.7
Min nTPM: 95.9
Std nTPM: 56.0
Median nTPM: 190.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 389.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 378.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 370.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 335.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 331.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 313.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 301.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 300.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 299.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 299.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 284.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 141.1
FF:10158-103A5 76 years, female 141.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.0
Pig sample Sample description nTPM
Midbrain
nTPM: 86.0
Samples: 4

Max nTPM: 144.6
Min nTPM: 54.5
Sample A Female 144.6
Sample B Female 74.6
Sample C Male 70.2
Sample D Male 54.5
Periaqueductal gray
nTPM: 68.1
Samples: 3

Max nTPM: 74.5
Min nTPM: 63.9
Sample B Female 63.9
Sample C Male 74.5
Sample D Male 66.0
Substantia nigra
nTPM: 74.5
Samples: 4

Max nTPM: 100.5
Min nTPM: 60.6
Sample A Female 100.5
Sample B Female 63.7
Sample C Male 73.1
Sample D Male 60.6
Superior colliculi
nTPM: 80.1
Samples: 4

Max nTPM: 103.9
Min nTPM: 61.7
Sample A Female 82.8
Sample B Female 103.9
Sample C Male 72.0
Sample D Male 61.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.6
Samples: 4

Max nTPM: 55.2
Min nTPM: 50.5
Sample A Male 51.4
Sample B Male 50.5
Sample C Female 55.2
Sample D Female 53.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
71991720 Antisense, RP_051012_03_C12, Mouse strain C57BL/6J (56 days, male) 4.6
70795910 Antisense, RP_050712_02_B12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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