HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.8 nTPM
HPA:4.8 nTPM
GTEx:27.3 nTPM
FANTOM5:171.6 Scaled Tags Per Million
Pig:76.8 nTPM
Mouse:68.2 nTPM
Allen mouse:13.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA025031Antibody HPA025039Antibody HPA025041
Glial cells Not detectedNot detectedLow
Neuronal cells LowMediumLow






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 4.8
Sample id Sample description nTPM
Hippocampus
nTPM: 3.2
2621 Female, age 67, right hemisphere 10.0
2529 Female, age 94, left hemisphere 4.9
2148 Female, age 91, left hemisphere 3.8
1855 Male, age 76, left hemisphere 0.9
1898 Male, age 80, left hemisphere 0.0
1911 Female, age 85, right hemisphere 0.0
Dentate gyrus
nTPM: 2.4
2530 Female, age 94, left hemisphere 9.5
2531 Female, age 67, both hemispheres 5.1
1927 Female, age 91, both hemispheres 0.0
2010 Male, age 76, both hemispheres 0.0
2246 Female, age 85, both hemispheres 0.0
2528 Male, age 74, both hemispheres 0.0
Entorhinal gyrus
nTPM: 3.1
2613 Female, age 94, left hemisphere 8.6
2686 Male, age 75, right hemisphere 8.5
2764 Male, age 80, right hemisphere 1.6
1787 Male, age 76, left hemisphere 0.1
1938 Female, age 85, left hemisphere 0.0
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 0.7
2749 Male, age 80, left hemisphere 2.7
2045 Male, age 76, both hemispheres 1.2
1873 Female, age 85, both hemispheres 0.0
2082 Female, age 91, right hemisphere 0.0
2527 Male, age 74, both hemispheres 0.0
Hippocampus, CA2
nTPM: 2.0
1892 Male, age 76, both hemispheres 6.2
2437 Female, age 94, left hemisphere 5.9
1940 Female, age 85, left hemisphere 0.0
1963 Male, age 80, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 3.0
2861 Female, age 67, both hemispheres 7.7
2436 Male, age 74, both hemispheres 5.8
2620 Female, age 94, left hemisphere 2.9
2137 Male, age 80, left hemisphere 1.5
1867 Male, age 76, both hemispheres 0.1
1891 Female, age 85, both hemispheres 0.0
Parahippocampal cortex
nTPM: 4.8
2245 Female, age 91, both hemispheres 16.1
2622 Female, age 67, right hemisphere 10.3
2532 Female, age 72, left hemisphere 8.4
1850 Male, age 80, both hemispheres 6.1
2693 Female, age 94, both hemispheres 4.2
2692 Male, age 74, both hemispheres 3.0
1933 Female, age 85, both hemispheres 0.0
1990 Female, age 91, right hemisphere 0.0
2018 Male, age 76, both hemispheres 0.0
2250 Female, age 67, right hemisphere 0.0
Perirhinal gyrus
nTPM: 2.7
2848 Male, age 76, right hemisphere 8.4
2521 Female, age 94, right hemisphere 3.7
1841 Female, age 85, right hemisphere 0.9
1794 Male, age 80, right hemisphere 0.6
1847 Female, age 91, left hemisphere 0.0
Subiculum
nTPM: 3.7
2438 Female, age 94, left hemisphere 20.8
2619 Male, age 74, both hemispheres 1.1
1901 Male, age 80, both hemispheres 0.1
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 27.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.3
Samples: 197

Max nTPM: 41.4
Min nTPM: 11.8
Std nTPM: 5.1
Median nTPM: 26.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 41.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 40.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 39.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 39.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 38.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 38.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 38.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 38.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 37.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 37.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 37.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 171.6
FF:10153-102I9 76 years, female 181.0
FF:10169-103B7 60 years, female 162.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 76.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 73.7
Samples: 4

Max nTPM: 84.7
Min nTPM: 58.9
Sample A Female 84.7
Sample B Female 75.3
Sample C Male 75.8
Sample D Male 58.9
Entorhinal cortex
nTPM: 76.8
Samples: 4

Max nTPM: 82.0
Min nTPM: 73.2
Sample A Female 82.0
Sample B Female 76.7
Sample C Male 73.2
Sample D Male 75.3
Subiculum
nTPM: 68.4
Samples: 4

Max nTPM: 83.1
Min nTPM: 62.2
Sample A Female 83.1
Sample B Female 62.2
Sample C Male 65.8
Sample D Male 62.6
Ventral hippocampus
nTPM: 67.1
Samples: 4

Max nTPM: 76.7
Min nTPM: 52.3
Sample A Female 69.9
Sample B Female 52.3
Sample C Male 69.4
Sample D Male 76.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 68.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 68.2
Samples: 4

Max nTPM: 80.2
Min nTPM: 57.9
Sample A Male 67.5
Sample B Male 67.2
Sample C Female 57.9
Sample D Female 80.2
Hippocampal formation
nTPM: 57.5
Samples: 4

Max nTPM: 66.1
Min nTPM: 47.8
Sample A Male 47.8
Sample B Male 66.1
Sample C Female 61.9
Sample D Female 54.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.6
69671971 Antisense, RP_050428_02_G02, Mouse strain C57BL/6J (56 days, male) 13.6

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