MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.8 nTPM
HPA:36.8 nTPM
GTEx:25.2 nTPM
FANTOM5:161.7 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:35.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.7
1830 Male, age 51, unknown 41.9
1833 Male, age 53, unknown 39.0
2411 Female, age 72, unknown 37.5
2219 Male, age 76, both hemispheres 36.0
2019 Male, age 18, unknown 33.3
1870 Female, age 42, unknown 32.4
1827 Male, age 72, unknown 28.0
2828 Female, age 72, unknown 26.0
2666 Male, age 74, left hemisphere 24.4
2586 Male, age 75, left hemisphere 19.1
Dorsal raphe nucleus
nTPM: 25.3
2750 Male, age 76, both hemispheres 36.1
2016 Female, age 72, unknown 27.3
1828 Male, age 53, unknown 22.9
2047 Male, age 72, unknown 21.6
2298 Female, age 72, unknown 18.6
Inferior colliculus
nTPM: 32.5
1890 Male, age 53, unknown 33.8
2849 Male, age 72, unknown 32.6
1848 Female, age 42, unknown 31.9
2097 Female, age 72, unknown 31.7
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Pedunculopontine tegmental nucleus
nTPM: 31.8
2338 Male, age 61, both hemispheres 33.3
1921 Female, age 85, both hemispheres 32.0
2334 Male, age 80, both hemispheres 30.0
Periaquaductal grey, anterior
nTPM: 25.4
1947 Male, age 18, unknown 29.0
2502 Female, age 75, unknown 25.6
1795 Male, age 51, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 29.1
2464 Female, age 72, unknown 33.6
2850 Male, age 76, both hemispheres 28.9
1831 Male, age 72, unknown 28.7
1840 Male, age 53, unknown 25.2
Periaquaductal grey, lateral
nTPM: 28.8
2140 Male, age 76, both hemispheres 29.7
2272 Male, age 74, both hemispheres 28.7
2053 Male, age 18, unknown 28.0
Pretectal area
nTPM: 27.7
2316 Male, age 76, right hemisphere 36.6
1815 Male, age 53, unknown 30.6
2407 Male, age 75, both hemispheres 29.4
2825 Male, age 18, unknown 29.3
2007 Male, age 72, unknown 28.2
2273 Male, age 74, both hemispheres 27.9
1817 Female, age 42, unknown 27.5
2667 Female, age 75, unknown 26.0
1944 Female, age 72, unknown 24.3
2224 Female, age 72, unknown 24.2
1816 Male, age 51, unknown 21.0
Red nucleus
nTPM: 36.8
2503 Female, age 72, unknown 45.4
2823 Male, age 76, right hemisphere 43.0
1865 Male, age 51, unknown 41.3
1904 Male, age 53, unknown 40.3
2769 Male, age 72, unknown 37.0
2227 Male, age 72, unknown 36.7
1954 Female, age 42, unknown 35.9
2785 Male, age 18, unknown 35.0
2588 Male, age 74, left hemisphere 34.0
1821 Female, age 72, unknown 33.8
2584 Male, age 75, left hemisphere 29.7
2725 Female, age 75, unknown 29.4
Substantia nigra
nTPM: 27.5
2409 Female, age 72, unknown 37.2
2590 Female, age 75, unknown 36.0
2583 Male, age 75, right hemisphere 31.9
2241 Male, age 72, unknown 28.5
1889 Female, age 72, unknown 28.2
2699 Male, age 18, unknown 26.2
1851 Male, age 51, unknown 25.4
1941 Male, age 53, unknown 23.4
2665 Male, age 74, both hemispheres 21.9
1916 Female, age 42, unknown 15.8
Superior colliculus
nTPM: 32.4
1913 Female, age 42, unknown 42.7
1895 Male, age 76, right hemisphere 39.8
1995 Male, age 72, unknown 37.4
1839 Male, age 51, unknown 34.4
2587 Male, age 74, left hemisphere 31.9
2668 Female, age 75, unknown 31.7
2087 Female, age 72, unknown 29.5
1796 Male, age 53, unknown 28.4
2261 Male, age 18, unknown 28.0
2664 Male, age 75, both hemispheres 20.7
Ventral tegmental area
nTPM: 27.2
2223 Female, age 72, unknown 31.2
2410 Female, age 72, unknown 31.0
2021 Male, age 53, unknown 26.7
2218 Male, age 76, both hemispheres 26.5
1942 Male, age 51, unknown 24.9
1915 Female, age 42, unknown 23.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.2
Samples: 139

Max nTPM: 50.3
Min nTPM: 10.8
Std nTPM: 7.3
Median nTPM: 24.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 50.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 45.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 45.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 43.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 40.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 39.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 39.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 38.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 38.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 36.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 36.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 161.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 161.7
FF:10158-103A5 76 years, female 161.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.1
Pig sample Sample description nTPM
Midbrain
nTPM: 39.1
Samples: 4

Max nTPM: 44.1
Min nTPM: 33.2
Sample A Female 44.1
Sample B Female 41.2
Sample C Male 33.2
Sample D Male 37.7
Periaqueductal gray
nTPM: 35.7
Samples: 3

Max nTPM: 38.4
Min nTPM: 31.9
Sample B Female 36.8
Sample C Male 31.9
Sample D Male 38.4
Substantia nigra
nTPM: 35.4
Samples: 4

Max nTPM: 39.7
Min nTPM: 32.5
Sample A Female 36.2
Sample B Female 33.2
Sample C Male 32.5
Sample D Male 39.7
Superior colliculi
nTPM: 36.3
Samples: 4

Max nTPM: 40.2
Min nTPM: 32.9
Sample A Female 35.2
Sample B Female 32.9
Sample C Male 36.8
Sample D Male 40.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 39.1
Min nTPM: 31.3
Sample A Male 31.3
Sample B Male 39.1
Sample C Female 36.2
Sample D Female 34.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69134544 Antisense, RP_050321_03_B01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.