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SLC25A3
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:131.2 nTPM
HPA:131.2 nTPM
GTEx:172.2 nTPM
FANTOM5:144.0 Scaled Tags Per Million
Pig:102.6 nTPM
Mouse:281.8 nTPM
Allen mouse:16.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 131.2
Sample id Sample description nTPM
Amygdala
nTPM: 131.2
2814 Male, age 76, right hemisphere 138.0
2514 Male, age 75, right hemisphere 135.9
2695 Female, age 67, right hemisphere 135.7
1987 Female, age 91, left hemisphere 125.7
2517 Female, age 94, left hemisphere 121.0
Basal amygdala
nTPM: 113.7
2609 Male, age 75, right hemisphere 124.2
2110 Male, age 80, left hemisphere 121.0
2243 Female, age 91, right hemisphere 116.5
2685 Female, age 94, left hemisphere 107.9
1955 Male, age 76, both hemispheres 106.7
2827 Female, age 67, right hemisphere 105.8
Central amygdala
nTPM: 123.9
2826 Female, age 94, left hemisphere 137.0
1905 Male, age 76, both hemispheres 135.6
2515 Male, age 75, right hemisphere 134.0
2239 Male, age 80, left hemisphere 112.0
2701 Female, age 91, right hemisphere 100.8
Corticomedial amygdala
nTPM: 113.3
2428 Male, age 75, right hemisphere 132.1
2829 Male, age 80, left hemisphere 125.1
2242 Female, age 91, right hemisphere 113.3
2429 Female, age 94, left hemisphere 110.8
2535 Female, age 67, right hemisphere 100.1
2240 Male, age 76, both hemispheres 98.6
Lateral amygdala
nTPM: 120.8
2516 Male, age 75, right hemisphere 137.1
1883 Male, age 76, both hemispheres 134.4
2534 Female, age 94, left hemisphere 127.8
2830 Female, age 67, right hemisphere 116.4
2256 Male, age 80, left hemisphere 105.6
2255 Female, age 91, right hemisphere 103.2
Stria terminalis, bed nucleus
nTPM: 119.4
1974 Female, age 91, both hemispheres 136.8
2486 Female, age 94, both hemispheres 111.9
2201 Male, age 74, unknown 109.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 172.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 172.2
Samples: 152

Max nTPM: 273.0
Min nTPM: 93.0
Std nTPM: 33.9
Median nTPM: 167.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 273.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 272.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 253.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 246.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 244.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 238.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 237.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 235.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 229.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 228.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 228.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 222.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 220.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 220.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 219.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 219.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 218.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 217.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 217.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 215.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 214.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 210.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 209.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 207.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 206.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 205.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 205.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 205.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 205.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 204.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 204.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 202.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 202.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 201.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 200.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 198.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 195.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 194.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 193.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 193.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 192.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 192.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 192.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 191.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 189.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 188.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 185.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 184.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 183.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 182.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 181.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 179.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 179.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 179.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 176.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 175.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 175.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 175.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 175.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 175.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 174.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 174.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 174.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 174.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 173.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 172.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 172.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 170.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 170.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 169.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 168.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 168.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 168.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 168.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 168.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 167.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 167.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 166.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 166.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 166.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 166.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 165.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 163.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 163.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 163.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 162.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 161.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 161.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 160.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 159.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 159.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 159.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 158.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 158.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 158.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 158.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 157.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 157.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 155.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 155.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 155.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 155.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 154.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 153.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 153.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 152.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 152.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 151.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 151.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 151.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 150.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 149.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 149.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 149.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 148.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 148.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 147.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 147.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 147.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 147.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 146.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 145.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 145.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 144.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 143.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 143.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 142.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 141.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 141.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 140.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 138.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 137.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 137.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 137.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 136.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 133.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 133.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 133.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 131.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 129.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 127.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 125.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 125.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 123.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 122.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 121.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 118.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 114.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 113.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 110.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 100.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 93.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 144.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 144.0
FF:10151-102I7 76 years, female 144.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 102.6
Pig sample Sample description nTPM
Amygdala
nTPM: 102.6
Samples: 4

Max nTPM: 120.8
Min nTPM: 88.2
Sample A Female 120.8
Sample B Female 105.8
Sample C Male 95.6
Sample D Male 88.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 281.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 281.8
Samples: 4

Max nTPM: 298.7
Min nTPM: 268.9
Sample A Male 284.5
Sample B Male 275.0
Sample C Female 298.7
Sample D Female 268.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.0
972 Antisense, RP_Baylor_102959, Mouse strain C57BL/6J (56 days, male) 16.0
975 Antisense, RP_Baylor_102959, Mouse strain C57BL/6J (56 days, male) 15.7

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