MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.3 nTPM
HPA:43.3 nTPM
GTEx:34.0 nTPM
FANTOM5:131.6 Scaled Tags Per Million
Pig:43.2 nTPM
Mouse:54.8 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.5
1830 Male, age 51, unknown 43.0
1833 Male, age 53, unknown 39.7
2411 Female, age 72, unknown 34.4
1870 Female, age 42, unknown 30.7
2019 Male, age 18, unknown 28.3
2219 Male, age 76, both hemispheres 26.6
2666 Male, age 74, left hemisphere 23.7
2586 Male, age 75, left hemisphere 21.8
2828 Female, age 72, unknown 19.9
1827 Male, age 72, unknown 16.4
Dorsal raphe nucleus
nTPM: 17.7
2750 Male, age 76, both hemispheres 29.2
2016 Female, age 72, unknown 22.2
1828 Male, age 53, unknown 16.3
2047 Male, age 72, unknown 13.5
2298 Female, age 72, unknown 7.7
Inferior colliculus
nTPM: 19.8
2849 Male, age 72, unknown 25.4
1848 Female, age 42, unknown 21.1
1890 Male, age 53, unknown 20.0
2097 Female, age 72, unknown 12.8
Median raphe nucleus
nTPM: 17.3
2220 Male, age 76, midline 17.3
Pedunculopontine tegmental nucleus
nTPM: 22.3
2334 Male, age 80, both hemispheres 24.0
2338 Male, age 61, both hemispheres 21.5
1921 Female, age 85, both hemispheres 21.4
Periaquaductal grey, anterior
nTPM: 14.9
2502 Female, age 75, unknown 20.7
1947 Male, age 18, unknown 14.9
1795 Male, age 51, unknown 9.2
Periaquaductal grey, dorsal
nTPM: 14.8
2464 Female, age 72, unknown 25.3
1831 Male, age 72, unknown 14.7
2850 Male, age 76, both hemispheres 11.2
1840 Male, age 53, unknown 7.9
Periaquaductal grey, lateral
nTPM: 14.5
2053 Male, age 18, unknown 18.5
2272 Male, age 74, both hemispheres 15.2
2140 Male, age 76, both hemispheres 9.8
Pretectal area
nTPM: 17.9
1815 Male, age 53, unknown 26.9
1817 Female, age 42, unknown 25.3
2407 Male, age 75, both hemispheres 24.9
2316 Male, age 76, right hemisphere 24.7
2825 Male, age 18, unknown 22.2
2007 Male, age 72, unknown 17.8
2224 Female, age 72, unknown 12.4
2273 Male, age 74, both hemispheres 11.9
2667 Female, age 75, unknown 11.1
1816 Male, age 51, unknown 9.7
1944 Female, age 72, unknown 9.5
Red nucleus
nTPM: 43.3
1865 Male, age 51, unknown 57.1
1904 Male, age 53, unknown 53.9
1821 Female, age 72, unknown 48.4
2227 Male, age 72, unknown 46.7
2503 Female, age 72, unknown 46.1
2769 Male, age 72, unknown 44.7
2823 Male, age 76, right hemisphere 43.7
1954 Female, age 42, unknown 42.7
2588 Male, age 74, left hemisphere 39.8
2785 Male, age 18, unknown 33.0
2725 Female, age 75, unknown 32.9
2584 Male, age 75, left hemisphere 30.8
Substantia nigra
nTPM: 23.4
2409 Female, age 72, unknown 41.6
2699 Male, age 18, unknown 30.3
2583 Male, age 75, right hemisphere 27.9
2590 Female, age 75, unknown 25.0
1851 Male, age 51, unknown 22.6
1889 Female, age 72, unknown 20.9
2241 Male, age 72, unknown 19.5
1941 Male, age 53, unknown 17.3
2665 Male, age 74, both hemispheres 15.0
1916 Female, age 42, unknown 13.6
Superior colliculus
nTPM: 24.1
1913 Female, age 42, unknown 35.2
1895 Male, age 76, right hemisphere 34.3
1995 Male, age 72, unknown 32.1
2668 Female, age 75, unknown 29.3
2587 Male, age 74, left hemisphere 29.2
1839 Male, age 51, unknown 27.6
1796 Male, age 53, unknown 16.3
2664 Male, age 75, both hemispheres 13.4
2261 Male, age 18, unknown 13.3
2087 Female, age 72, unknown 10.5
Ventral tegmental area
nTPM: 22.9
2223 Female, age 72, unknown 34.1
2410 Female, age 72, unknown 33.7
2218 Male, age 76, both hemispheres 19.9
2021 Male, age 53, unknown 18.6
1915 Female, age 42, unknown 15.9
1942 Male, age 51, unknown 15.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.0
Samples: 139

Max nTPM: 75.9
Min nTPM: 10.7
Std nTPM: 12.4
Median nTPM: 31.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 75.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 69.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 61.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 59.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 58.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 57.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 56.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 55.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 55.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 55.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 54.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.6
FF:10158-103A5 76 years, female 131.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.2
Pig sample Sample description nTPM
Midbrain
nTPM: 43.2
Samples: 4

Max nTPM: 59.9
Min nTPM: 33.0
Sample A Female 59.9
Sample B Female 43.1
Sample C Male 33.0
Sample D Male 36.7
Periaqueductal gray
nTPM: 35.1
Samples: 3

Max nTPM: 38.1
Min nTPM: 32.7
Sample B Female 38.1
Sample C Male 32.7
Sample D Male 34.5
Substantia nigra
nTPM: 40.7
Samples: 4

Max nTPM: 46.8
Min nTPM: 37.3
Sample A Female 39.9
Sample B Female 38.6
Sample C Male 37.3
Sample D Male 46.8
Superior colliculi
nTPM: 38.0
Samples: 4

Max nTPM: 40.5
Min nTPM: 35.0
Sample A Female 39.3
Sample B Female 37.3
Sample C Male 35.0
Sample D Male 40.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.9
Samples: 4

Max nTPM: 58.5
Min nTPM: 51.1
Sample A Male 51.1
Sample B Male 56.0
Sample C Female 58.5
Sample D Female 53.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
68924745 Antisense, RP_050303_02_H10, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.