MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:46.2 nTPM
FANTOM5:90.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.5
1827 Male, age 72, unknown 36.2
2411 Female, age 72, unknown 36.2
2019 Male, age 18, unknown 34.1
2586 Male, age 75, left hemisphere 32.5
2219 Male, age 76, both hemispheres 31.7
2666 Male, age 74, left hemisphere 30.7
1870 Female, age 42, unknown 29.9
1830 Male, age 51, unknown 28.6
1833 Male, age 53, unknown 28.1
2828 Female, age 72, unknown 27.0
Dorsal raphe nucleus
nTPM: 26.1
2750 Male, age 76, both hemispheres 35.0
2298 Female, age 72, unknown 29.0
2047 Male, age 72, unknown 23.7
1828 Male, age 53, unknown 21.8
2016 Female, age 72, unknown 20.9
Inferior colliculus
nTPM: 24.9
2097 Female, age 72, unknown 29.3
1890 Male, age 53, unknown 24.0
1848 Female, age 42, unknown 23.2
2849 Male, age 72, unknown 22.9
Median raphe nucleus
nTPM: 34.3
2220 Male, age 76, midline 34.3
Pedunculopontine tegmental nucleus
nTPM: 28.5
1921 Female, age 85, both hemispheres 31.9
2334 Male, age 80, both hemispheres 29.1
2338 Male, age 61, both hemispheres 24.5
Periaquaductal grey, anterior
nTPM: 27.5
1795 Male, age 51, unknown 29.4
2502 Female, age 75, unknown 27.3
1947 Male, age 18, unknown 25.8
Periaquaductal grey, dorsal
nTPM: 25.5
1831 Male, age 72, unknown 29.2
2464 Female, age 72, unknown 26.2
1840 Male, age 53, unknown 25.9
2850 Male, age 76, both hemispheres 20.9
Periaquaductal grey, lateral
nTPM: 23.6
2053 Male, age 18, unknown 27.8
2272 Male, age 74, both hemispheres 24.0
2140 Male, age 76, both hemispheres 18.8
Pretectal area
nTPM: 37.1
1944 Female, age 72, unknown 63.2
1816 Male, age 51, unknown 59.6
1815 Male, age 53, unknown 49.6
2007 Male, age 72, unknown 47.4
1817 Female, age 42, unknown 43.5
2407 Male, age 75, both hemispheres 28.4
2224 Female, age 72, unknown 25.5
2667 Female, age 75, unknown 24.1
2825 Male, age 18, unknown 23.4
2273 Male, age 74, both hemispheres 22.7
2316 Male, age 76, right hemisphere 20.8
Red nucleus
nTPM: 27.7
2785 Male, age 18, unknown 34.9
2584 Male, age 75, left hemisphere 33.6
2588 Male, age 74, left hemisphere 32.5
2725 Female, age 75, unknown 31.8
1821 Female, age 72, unknown 28.2
2503 Female, age 72, unknown 26.9
1865 Male, age 51, unknown 26.6
1904 Male, age 53, unknown 25.9
1954 Female, age 42, unknown 24.9
2823 Male, age 76, right hemisphere 23.8
2769 Male, age 72, unknown 21.7
2227 Male, age 72, unknown 21.2
Substantia nigra
nTPM: 31.7
1889 Female, age 72, unknown 46.1
2409 Female, age 72, unknown 39.1
2241 Male, age 72, unknown 32.7
2583 Male, age 75, right hemisphere 30.9
1851 Male, age 51, unknown 30.7
1916 Female, age 42, unknown 30.5
1941 Male, age 53, unknown 29.5
2590 Female, age 75, unknown 29.5
2665 Male, age 74, both hemispheres 24.4
2699 Male, age 18, unknown 23.8
Superior colliculus
nTPM: 34.4
2087 Female, age 72, unknown 48.1
2668 Female, age 75, unknown 42.4
1913 Female, age 42, unknown 41.0
2261 Male, age 18, unknown 40.0
1796 Male, age 53, unknown 34.4
1995 Male, age 72, unknown 33.5
2587 Male, age 74, left hemisphere 28.9
1895 Male, age 76, right hemisphere 27.8
1839 Male, age 51, unknown 24.6
2664 Male, age 75, both hemispheres 23.4
Ventral tegmental area
nTPM: 27.9
2410 Female, age 72, unknown 33.2
2223 Female, age 72, unknown 30.1
1915 Female, age 42, unknown 27.6
2021 Male, age 53, unknown 27.3
2218 Male, age 76, both hemispheres 25.5
1942 Male, age 51, unknown 23.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.2
Samples: 139

Max nTPM: 92.2
Min nTPM: 7.9
Std nTPM: 16.1
Median nTPM: 46.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 92.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 87.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 86.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 83.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 80.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 79.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 77.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 72.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 71.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 70.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 70.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.7
FF:10158-103A5 76 years, female 90.7

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The Human Protein Atlas

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