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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:73.0 nTPM
HPA:28.8 nTPM
GTEx:73.0 nTPM
FANTOM5:52.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA008848Antibody CAB002147
Glandular cells LowNot detected





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 28.8
overview
Male, age 65
Small intestine sample 232
nTPM: 16.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 27.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 35.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 36

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 73.0
Samples: 187

Max nTPM: 418.8
Min nTPM: 15.7
Std nTPM: 69.5
Median nTPM: 45.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 418.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 352.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 340.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 283.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 265.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 258.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 228.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 219.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 212.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 201.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 201.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 192.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 192.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 191.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 187.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 185.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 183.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 179.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 178.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 176.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 176.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 171.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 170.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 169.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 166.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 153.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 147.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 147.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 145.0
GTEX-1192X-2526-SM-59868 50-59 years, male 140.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 135.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 132.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 128.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 123.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 122.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 121.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 115.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 112.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 110.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 110.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 103.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 102.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 101.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 99.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 98.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 98.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 90.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 89.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 89.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 81.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 81.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 79.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 77.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 77.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 76.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 74.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 73.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 72.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 71.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 70.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 68.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 68.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 66.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 64.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 64.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 63.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 61.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 60.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 60.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 59.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 59.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 58.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 56.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 56.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 56.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 55.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 54.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 53.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 53.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 52.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 51.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 51.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 50.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 50.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 50.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 48.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 48.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 48.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 47.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 46.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 46.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 46.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 46.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 45.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 42.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 41.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 41.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 40.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 40.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 39.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 39.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 39.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 39.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 38.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 38.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 37.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 36.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 36.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 35.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 35.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 34.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 34.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 34.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 34.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 34.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 33.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 33.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 32.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 32.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 31.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 31.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 31.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 31.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 30.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 30.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 30.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 29.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 29.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 29.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 29.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 29.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 28.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 28.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 28.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 28.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 28.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 27.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 27.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 27.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 27.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 27.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 27.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 27.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 26.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 26.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 26.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 26.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 26.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 26.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 26.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 25.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 25.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 25.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 25.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 25.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 25.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 25.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 25.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 24.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 24.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 23.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 23.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 23.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 23.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 23.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 23.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 22.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 22.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 22.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 22.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 22.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 22.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 20.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 20.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 20.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 20.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 20.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 20.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 19.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 19.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 18.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 18.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 18.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 17.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 17.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 17.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 15.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 52.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 52.9
FF:10024-101D6 15,40,85 years, mixed 52.9

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