BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.5 nTPM
HPA:6.5 nTPM
GTEx:10.9 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:1.4 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.2
1857 Female, age 85, left hemisphere 6.7
2846 Female, age 79, unknown 6.6
1854 Male, age 80, left hemisphere 6.3
1781 Male, age 74, unknown 6.2
2288 Male, age 75, left hemisphere 6.2
2290 Female, age 72, unknown 6.1
2481 Female, age 94, left hemisphere 5.8
2289 Male, age 61, right hemisphere 5.5
Claustrum
nTPM: 6.1
2196 Female, age 79, unknown 6.5
1956 Male, age 74, unknown 6.4
2198 Male, age 80, both hemispheres 6.4
2491 Male, age 75, both hemispheres 6.4
2392 Female, age 94, both hemispheres 6.3
2568 Male, age 61, both hemispheres 6.2
2284 Female, age 91, both hemispheres 5.7
2645 Female, age 72, unknown 5.5
2292 Female, age 85, both hemispheres 5.4
Globus pallidus, externus
nTPM: 5.6
2395 Male, age 75, both hemispheres 6.3
2772 Female, age 79, unknown 6.1
2646 Male, age 61, right hemisphere 5.3
1996 Male, age 80, right hemisphere 5.1
2567 Female, age 72, unknown 5.1
Globus pallidus, internus
nTPM: 5.4
2287 Male, age 75, right hemisphere 6.0
2483 Female, age 94, right hemisphere 5.7
2037 Male, age 80, right hemisphere 5.6
1818 Male, age 74, unknown 5.5
2778 Female, age 91, both hemispheres 5.3
2566 Female, age 72, unknown 5.0
2111 Female, age 85, right hemisphere 4.8
Nucleus accumbens
nTPM: 6.2
1856 Female, age 91, right hemisphere 7.3
1783 Male, age 74, unknown 6.2
2286 Male, age 75, left hemisphere 6.2
1806 Female, age 85, left hemisphere 6.1
2698 Female, age 72, unknown 6.1
2391 Female, age 94, left hemisphere 6.0
2824 Male, age 61, right hemisphere 6.0
2732 Male, age 80, right hemisphere 5.4
Nucleus basalis of Meynert
nTPM: 5.7
2821 Male, age 75, both hemispheres 6.4
2393 Male, age 80, right hemisphere 6.1
2484 Female, age 94, left hemisphere 5.5
2569 Male, age 61, both hemispheres 5.0
Nucleus of the diagonal band
nTPM: 6.5
2775 Male, age 80, right hemisphere 7.4
2195 Female, age 85, both hemispheres 6.8
1812 Female, age 91, both hemispheres 6.6
2029 Male, age 61, right hemisphere 6.1
1979 Male, age 74, unknown 5.8
Olfactory tubercle
nTPM: 6.4
1846 Male, age 80, right hemisphere 6.9
1998 Female, age 91, both hemispheres 6.5
2487 Female, age 94, left hemisphere 6.3
2856 Male, age 75, right hemisphere 6.1
Putamen
nTPM: 6.2
1937 Female, age 91, right hemisphere 7.2
2466 Female, age 79, unknown 6.7
1838 Male, age 80, right hemisphere 6.3
1829 Male, age 74, unknown 6.1
2482 Female, age 94, left hemisphere 5.7
2647 Male, age 75, left hemisphere 5.7
2489 Female, age 72, unknown 5.6
Septal nuclei
nTPM: 6.1
2031 Female, age 72, unknown 7.0
1960 Male, age 74, unknown 6.9
2009 Female, age 91, both hemispheres 6.6
2059 Female, age 85, both hemispheres 5.8
2629 Female, age 94, right hemisphere 5.8
2394 Male, age 61, left hemisphere 5.5
2199 Male, age 80, right hemisphere 5.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.3
Samples: 246

Max nTPM: 24.1
Min nTPM: 1.4
Std nTPM: 4.9
Median nTPM: 9.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 24.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 23.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 23.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 22.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 19.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 19.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 19.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 19.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 18.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 18.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 18.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.9
Samples: 246

Max nTPM: 27.4
Min nTPM: 2.0
Std nTPM: 4.3
Median nTPM: 11.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 27.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 21.5
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 19.5
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 19.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 18.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 18.7
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 18.7
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 18.5
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 17.9
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 17.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 17.4
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Brain - Putamen (basal ganglia)
Average nTPM: 9.2
Samples: 205

Max nTPM: 26.3
Min nTPM: 1.6
Std nTPM: 5.0
Median nTPM: 8.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 26.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 21.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 21.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 21.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 21.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 20.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 19.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 19.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 19.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 18.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 18.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.3
FF:10164-103B2 76 years, female 11.3
Globus pallidus
Scaled Tags Per Million: 8.0
FF:10175-103C4 60 years, female 11.8
FF:10161-103A8 76 years, female 4.3
Nucleus accumbens
Scaled Tags Per Million: 19.9
FF:10037-101F1 23-56 years, mixed 19.9
Putamen
Scaled Tags Per Million: 17.3
FF:10176-103C5 60 years, female 17.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Caudate
nTPM: 10.8
Samples: 4

Max nTPM: 13.6
Min nTPM: 9.0
Sample A Female 11.1
Sample B Female 9.3
Sample C Male 13.6
Sample D Male 9.0
Putamen
nTPM: 9.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 8.6
Sample C Male 15.5
Sample D Male 8.2
Septum
nTPM: 8.3
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.3
Sample A Female 10.0
Sample B Female 7.5
Sample C Male 7.3
Sample D Male 8.4
Ventral pallidum
nTPM: 8.5
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.6
Sample A Female 9.7
Sample B Female 9.0
Sample C Male 7.8
Sample D Male 7.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.4
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.9
Sample A Male 1.9
Sample B Male 0.9
Sample C Female 1.5
Sample D Female 1.3
Septum
nTPM: 1.3
Samples: 4

Max nTPM: 1.4
Min nTPM: 1.2
Sample A Male 1.2
Sample B Male 1.2
Sample C Female 1.4
Sample D Female 1.3
Ventral forebrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.7
Sample A Male 1.3
Sample B Male 0.7
Sample C Female 1.3
Sample D Female 1.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
276069 Antisense, RP_040609_01_C01, Mouse strain C57BL/6J (56 days, male) 0.4
199146 Antisense, RP_040609_01_C01, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.5
276069 Antisense, RP_040609_01_C01, Mouse strain C57BL/6J (56 days, male) 0.5
199146 Antisense, RP_040609_01_C01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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