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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:24.7 nTPM
GTEx:30.1 nTPM
FANTOM5:223.8 Scaled Tags Per Million
Pig:44.5 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 24.7
Sample id Sample description nTPM
Putamen
nTPM: 24.7
1838 Male, age 80, right hemisphere 45.9
1829 Male, age 74, unknown 31.0
2466 Female, age 79, unknown 25.1
1937 Female, age 91, right hemisphere 24.6
2489 Female, age 72, unknown 20.7
2647 Male, age 75, left hemisphere 13.9
2482 Female, age 94, left hemisphere 11.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.1
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 30.1
Samples: 205

Max nTPM: 80.0
Min nTPM: 1.6
Std nTPM: 18.2
Median nTPM: 28.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 80.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 73.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 73.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 72.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 72.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 66.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 65.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 64.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 61.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 61.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 61.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 59.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 58.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 58.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 58.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 56.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 56.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 55.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 55.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 53.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 52.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 52.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 52.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 52.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 51.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 51.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 50.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 50.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 50.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 50.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 49.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 49.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 49.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 49.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 49.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 49.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 48.9
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 48.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 48.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 48.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 48.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 48.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 47.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 47.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 46.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 46.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 46.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 45.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 45.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 45.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 44.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 44.1
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 43.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 43.7
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 43.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 43.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 41.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 41.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 41.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 40.6
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 40.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 40.1
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 40.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 40.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 39.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 39.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 39.3
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 39.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 38.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 38.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 38.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 37.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 37.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 37.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 37.6
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 37.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 37.0
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 36.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 36.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 35.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 35.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 35.6
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 35.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 35.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 35.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 35.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 34.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 34.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 33.4
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 33.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 33.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 32.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 32.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 32.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 32.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 30.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 30.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 28.9
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 28.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 28.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 28.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 28.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 28.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 27.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 27.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 27.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 27.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 26.9
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 26.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 26.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 26.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 26.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 26.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 26.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 26.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 25.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 25.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 25.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 25.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 24.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 24.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 24.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 23.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 23.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 23.0
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 23.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 21.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 21.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 21.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 21.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 21.2
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 20.6
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 20.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 20.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 19.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 19.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 19.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 19.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 18.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 18.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 18.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 18.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 17.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 17.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 17.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 17.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 17.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 17.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 16.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 16.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 16.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 16.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 16.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 15.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 15.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 14.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 14.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 14.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 13.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 13.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 11.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 11.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 10.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 10.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 10.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 10.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 10.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 9.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 8.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 8.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 8.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 8.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 8.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 8.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 8.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 8.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 7.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 7.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 7.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 7.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 7.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 7.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 6.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 6.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 6.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 5.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 5.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 5.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 5.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 5.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 4.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 4.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 4.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 4.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 4.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 4.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 3.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 3.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 3.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 3.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 3.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 2.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 1.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1.6
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 223.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 223.8
FF:10176-103C5 60 years, female 223.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.5
Pig sample Sample description nTPM
Putamen
nTPM: 44.5
Samples: 4

Max nTPM: 74.3
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 48.5
Sample C Male 74.3
Sample D Male 44.6

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