MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:128.6 nTPM
HPA:128.6 nTPM
GTEx:145.1 nTPM
FANTOM5:95.5 Scaled Tags Per Million
Pig:107.3 nTPM
Mouse:213.7 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 128.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 120.0
1827 Male, age 72, unknown 124.5
2019 Male, age 18, unknown 123.7
1870 Female, age 42, unknown 121.2
1833 Male, age 53, unknown 120.9
2411 Female, age 72, unknown 120.9
2666 Male, age 74, left hemisphere 120.9
2828 Female, age 72, unknown 120.1
1830 Male, age 51, unknown 118.1
2219 Male, age 76, both hemispheres 116.0
2586 Male, age 75, left hemisphere 114.0
Dorsal raphe nucleus
nTPM: 122.2
2298 Female, age 72, unknown 125.2
2750 Male, age 76, both hemispheres 124.5
1828 Male, age 53, unknown 123.5
2047 Male, age 72, unknown 122.4
2016 Female, age 72, unknown 115.4
Inferior colliculus
nTPM: 116.9
2097 Female, age 72, unknown 117.6
1890 Male, age 53, unknown 117.1
1848 Female, age 42, unknown 116.9
2849 Male, age 72, unknown 115.8
Median raphe nucleus
nTPM: 127.1
2220 Male, age 76, midline 127.1
Pedunculopontine tegmental nucleus
nTPM: 128.1
2338 Male, age 61, both hemispheres 140.9
2334 Male, age 80, both hemispheres 126.0
1921 Female, age 85, both hemispheres 117.2
Periaquaductal grey, anterior
nTPM: 120.3
1947 Male, age 18, unknown 123.2
1795 Male, age 51, unknown 121.5
2502 Female, age 75, unknown 116.3
Periaquaductal grey, dorsal
nTPM: 118.0
2850 Male, age 76, both hemispheres 120.3
1831 Male, age 72, unknown 119.2
1840 Male, age 53, unknown 118.2
2464 Female, age 72, unknown 114.3
Periaquaductal grey, lateral
nTPM: 118.8
2272 Male, age 74, both hemispheres 125.5
2140 Male, age 76, both hemispheres 116.2
2053 Male, age 18, unknown 114.7
Pretectal area
nTPM: 125.2
1817 Female, age 42, unknown 135.5
1944 Female, age 72, unknown 132.0
1816 Male, age 51, unknown 131.3
2007 Male, age 72, unknown 129.8
1815 Male, age 53, unknown 128.4
2667 Female, age 75, unknown 125.2
2273 Male, age 74, both hemispheres 124.3
2407 Male, age 75, both hemispheres 120.7
2224 Female, age 72, unknown 118.5
2825 Male, age 18, unknown 116.4
2316 Male, age 76, right hemisphere 115.4
Red nucleus
nTPM: 119.4
1821 Female, age 72, unknown 126.5
2725 Female, age 75, unknown 123.3
2785 Male, age 18, unknown 122.7
1865 Male, age 51, unknown 119.5
2823 Male, age 76, right hemisphere 119.4
2503 Female, age 72, unknown 119.2
1954 Female, age 42, unknown 118.3
2769 Male, age 72, unknown 118.1
2227 Male, age 72, unknown 118.0
2588 Male, age 74, left hemisphere 116.6
1904 Male, age 53, unknown 115.8
2584 Male, age 75, left hemisphere 115.8
Substantia nigra
nTPM: 128.6
1916 Female, age 42, unknown 137.4
2665 Male, age 74, both hemispheres 132.5
1851 Male, age 51, unknown 131.4
1941 Male, age 53, unknown 131.3
1889 Female, age 72, unknown 130.1
2699 Male, age 18, unknown 127.7
2590 Female, age 75, unknown 127.2
2583 Male, age 75, right hemisphere 125.5
2241 Male, age 72, unknown 123.9
2409 Female, age 72, unknown 119.1
Superior colliculus
nTPM: 121.4
2087 Female, age 72, unknown 126.1
2587 Male, age 74, left hemisphere 125.4
2261 Male, age 18, unknown 124.7
2668 Female, age 75, unknown 122.2
1796 Male, age 53, unknown 121.5
1913 Female, age 42, unknown 121.5
1995 Male, age 72, unknown 118.7
1895 Male, age 76, right hemisphere 118.2
2664 Male, age 75, both hemispheres 117.9
1839 Male, age 51, unknown 117.6
Ventral tegmental area
nTPM: 125.4
1915 Female, age 42, unknown 130.8
2410 Female, age 72, unknown 129.2
2218 Male, age 76, both hemispheres 127.9
2223 Female, age 72, unknown 123.5
1942 Male, age 51, unknown 121.2
2021 Male, age 53, unknown 120.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 145.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 145.1
Samples: 139

Max nTPM: 237.8
Min nTPM: 88.9
Std nTPM: 27.8
Median nTPM: 142.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 237.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 229.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 211.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 202.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 202.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 201.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 195.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 195.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 194.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 191.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 189.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.5
FF:10158-103A5 76 years, female 95.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 107.3
Pig sample Sample description nTPM
Midbrain
nTPM: 92.3
Samples: 4

Max nTPM: 116.3
Min nTPM: 77.1
Sample A Female 116.3
Sample B Female 79.5
Sample C Male 96.4
Sample D Male 77.1
Periaqueductal gray
nTPM: 83.2
Samples: 3

Max nTPM: 98.8
Min nTPM: 74.8
Sample B Female 74.8
Sample C Male 98.8
Sample D Male 75.9
Substantia nigra
nTPM: 96.6
Samples: 4

Max nTPM: 102.6
Min nTPM: 83.5
Sample A Female 102.2
Sample B Female 98.0
Sample C Male 102.6
Sample D Male 83.5
Superior colliculi
nTPM: 107.3
Samples: 4

Max nTPM: 118.5
Min nTPM: 88.8
Sample A Female 118.5
Sample B Female 116.3
Sample C Male 105.5
Sample D Male 88.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 213.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 213.7
Samples: 4

Max nTPM: 217.7
Min nTPM: 210.8
Sample A Male 213.0
Sample B Male 213.4
Sample C Female 210.8
Sample D Female 217.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
75080633 Antisense, RP_060412_04_G04, Mouse strain C57BL/6J (56 days, male) 13.8
74357646 Antisense, RP_060119_03_B08, Mouse strain C57BL/6J (56 days, male) 9.5
70919131 Antisense, RP_050712_04_C05, Mouse strain C57BL/6J (56 days, male) 8.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.