We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CAPZB
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CAPZB
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:126.1 nTPM
HPA:126.1 nTPM
GTEx:155.8 nTPM
FANTOM5:106.1 Scaled Tags Per Million
Pig:63.6 nTPM
Mouse:249.8 nTPM
Allen mouse:15.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 126.1
Sample id Sample description nTPM
Amygdala
nTPM: 126.1
2814 Male, age 76, right hemisphere 136.1
2514 Male, age 75, right hemisphere 128.3
1987 Female, age 91, left hemisphere 125.9
2695 Female, age 67, right hemisphere 122.3
2517 Female, age 94, left hemisphere 117.8
Basal amygdala
nTPM: 121.8
2609 Male, age 75, right hemisphere 126.0
2243 Female, age 91, right hemisphere 125.1
2110 Male, age 80, left hemisphere 124.4
2685 Female, age 94, left hemisphere 123.3
1955 Male, age 76, both hemispheres 123.1
2827 Female, age 67, right hemisphere 108.9
Central amygdala
nTPM: 120.7
1905 Male, age 76, both hemispheres 130.6
2239 Male, age 80, left hemisphere 121.4
2515 Male, age 75, right hemisphere 118.4
2701 Female, age 91, right hemisphere 117.9
2826 Female, age 94, left hemisphere 115.1
Corticomedial amygdala
nTPM: 122.9
2829 Male, age 80, left hemisphere 129.8
2242 Female, age 91, right hemisphere 125.6
2428 Male, age 75, right hemisphere 125.4
2429 Female, age 94, left hemisphere 122.7
2240 Male, age 76, both hemispheres 120.9
2535 Female, age 67, right hemisphere 113.0
Lateral amygdala
nTPM: 117.8
1883 Male, age 76, both hemispheres 129.6
2516 Male, age 75, right hemisphere 120.4
2534 Female, age 94, left hemisphere 118.8
2255 Female, age 91, right hemisphere 115.0
2256 Male, age 80, left hemisphere 114.4
2830 Female, age 67, right hemisphere 108.6
Stria terminalis, bed nucleus
nTPM: 119.4
1974 Female, age 91, both hemispheres 126.3
2486 Female, age 94, both hemispheres 117.0
2201 Male, age 74, unknown 114.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 155.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 155.8
Samples: 152

Max nTPM: 262.2
Min nTPM: 88.2
Std nTPM: 30.1
Median nTPM: 153.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 262.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 241.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 231.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 226.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 219.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 218.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 216.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 215.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 213.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 206.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 196.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 196.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 193.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 193.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 192.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 190.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 190.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 190.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 189.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 189.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 188.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 188.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 187.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 187.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 186.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 186.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 184.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 184.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 184.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 182.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 181.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 179.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 178.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 176.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 173.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 173.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 173.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 172.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 171.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 170.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 170.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 169.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 168.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 168.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 167.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 167.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 167.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 167.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 166.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 166.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 165.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 164.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 164.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 164.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 164.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 162.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 162.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 162.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 161.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 160.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 160.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 160.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 159.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 159.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 158.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 156.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 156.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 156.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 155.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 155.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 154.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 154.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 154.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 154.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 154.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 153.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 152.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 152.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 150.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 150.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 150.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 150.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 149.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 149.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 149.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 148.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 148.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 147.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 147.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 147.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 147.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 147.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 146.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 146.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 145.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 144.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 144.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 144.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 144.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 144.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 144.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 143.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 143.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 143.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 142.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 142.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 141.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 140.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 140.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 139.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 138.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 138.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 137.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 137.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 136.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 136.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 135.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 133.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 132.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 132.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 131.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 130.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 130.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 128.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 128.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 125.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 124.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 124.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 123.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 123.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 122.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 122.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 121.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 121.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 121.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 118.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 117.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 117.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 116.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 114.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 112.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 110.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 107.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 106.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 106.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 103.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 97.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 88.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 106.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 106.1
FF:10151-102I7 76 years, female 106.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 63.6
Pig sample Sample description nTPM
Amygdala
nTPM: 63.7
Samples: 4

Max nTPM: 88.6
Min nTPM: 54.8
Sample A Female 88.6
Sample B Female 55.6
Sample C Male 54.8
Sample D Male 55.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 249.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 249.9
Samples: 4

Max nTPM: 259.9
Min nTPM: 243.0
Sample A Male 249.5
Sample B Male 247.0
Sample C Female 243.0
Sample D Female 259.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.4
75080633 Antisense, RP_060412_04_G04, Mouse strain C57BL/6J (56 days, male) 17.0
70919131 Antisense, RP_050712_04_C05, Mouse strain C57BL/6J (56 days, male) 14.9
74357646 Antisense, RP_060119_03_B08, Mouse strain C57BL/6J (56 days, male) 14.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.