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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:126.3 nTPM
HPA:126.3 nTPM
GTEx:157.8 nTPM
FANTOM5:73.0 Scaled Tags Per Million
Pig:108.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 126.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 121.9
1981 Female, age 72, midline 128.9
2194 Female, age 79, both hemispheres 124.9
2816 Male, age 47, midline 120.5
2565 Male, age 75, midline 119.2
2048 Male, age 55, midline 116.1
Cervical spinal cord, dorsal horn
nTPM: 126.3
2173 Female, age 72, unknown 131.1
2069 Male, age 47, both hemispheres 129.2
2296 Male, age 66, both hemispheres 129.0
2297 Male, age 75, both hemispheres 126.0
2721 Male, age 90, both hemispheres 121.4
1877 Male, age 55, unknown 121.0
Cervical spinal cord, ventral horn
nTPM: 125.5
2098 Female, age 72, unknown 137.2
2295 Male, age 66, both hemispheres 125.0
2480 Male, age 75, both hemispheres 124.1
2809 Male, age 90, both hemispheres 123.8
2820 Female, age 79, both hemispheres 123.2
2068 Male, age 55, unknown 119.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 157.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 157.8
Samples: 159

Max nTPM: 226.2
Min nTPM: 98.6
Std nTPM: 23.2
Median nTPM: 156.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 226.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 215.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 213.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 204.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 204.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 202.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 201.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 197.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 197.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 192.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 192.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 189.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 188.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 186.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 186.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 185.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 185.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 185.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 184.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 184.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 184.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 184.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 183.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 183.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 183.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 182.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 182.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 181.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 180.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 179.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 179.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 178.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 178.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 177.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 176.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 176.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 175.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 175.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 175.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 174.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 174.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 173.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 172.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 172.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 172.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 171.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 171.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 170.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 169.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 167.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 167.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 167.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 166.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 165.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 165.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 165.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 165.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 165.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 165.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 164.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 164.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 163.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 163.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 163.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 163.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 163.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 163.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 162.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 161.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 160.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 160.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 159.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 159.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 159.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 159.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 157.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 157.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 157.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 156.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 156.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 156.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 155.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 155.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 155.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 154.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 154.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 154.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 153.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 152.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 151.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 151.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 151.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 151.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 150.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 149.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 149.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 149.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 149.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 148.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 148.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 147.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 147.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 147.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 147.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 146.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 146.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 146.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 145.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 145.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 145.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 145.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 144.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 144.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 143.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 143.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 142.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 141.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 141.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 140.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 140.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 140.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 140.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 139.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 139.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 139.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 138.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 138.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 137.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 137.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 136.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 134.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 134.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 133.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 133.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 133.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 133.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 132.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 132.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 132.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 131.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 131.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 129.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 129.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 127.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 127.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 126.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 126.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 124.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 124.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 123.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 121.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 117.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 116.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 113.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 112.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 112.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 105.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 98.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 73.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 73.0
FF:10159-103A6 76 years, female 82.6
FF:10181-103D1 60 years, female 63.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 108.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 100.2
Samples: 4

Max nTPM: 120.3
Min nTPM: 87.0
Sample A Female 87.0
Sample B Female 92.5
Sample C Male 120.3
Sample D Male 100.9
Ventral spinal cord
nTPM: 108.9
Samples: 4

Max nTPM: 127.5
Min nTPM: 99.7
Sample A Female 102.7
Sample B Female 105.6
Sample C Male 127.5
Sample D Male 99.7

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