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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:103.4 nTPM
HPA:103.4 nTPM
GTEx:70.3 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:108.5 nTPM
Allen mouse:1.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 103.4
Sample id Sample description nTPM
Amygdala
nTPM: 103.4
2814 Male, age 76, right hemisphere 150.3
2695 Female, age 67, right hemisphere 112.2
2514 Male, age 75, right hemisphere 95.3
2517 Female, age 94, left hemisphere 85.0
1987 Female, age 91, left hemisphere 74.2
Basal amygdala
nTPM: 86.5
1955 Male, age 76, both hemispheres 108.4
2827 Female, age 67, right hemisphere 90.2
2110 Male, age 80, left hemisphere 83.1
2609 Male, age 75, right hemisphere 81.9
2243 Female, age 91, right hemisphere 80.5
2685 Female, age 94, left hemisphere 74.8
Central amygdala
nTPM: 93.7
1905 Male, age 76, both hemispheres 119.5
2826 Female, age 94, left hemisphere 97.1
2515 Male, age 75, right hemisphere 93.4
2239 Male, age 80, left hemisphere 83.4
2701 Female, age 91, right hemisphere 75.1
Corticomedial amygdala
nTPM: 88.9
2240 Male, age 76, both hemispheres 105.0
2428 Male, age 75, right hemisphere 100.1
2429 Female, age 94, left hemisphere 88.5
2535 Female, age 67, right hemisphere 84.7
2829 Male, age 80, left hemisphere 79.2
2242 Female, age 91, right hemisphere 76.1
Lateral amygdala
nTPM: 95.9
2830 Female, age 67, right hemisphere 113.0
1883 Male, age 76, both hemispheres 103.4
2534 Female, age 94, left hemisphere 99.9
2516 Male, age 75, right hemisphere 98.6
2256 Male, age 80, left hemisphere 81.3
2255 Female, age 91, right hemisphere 79.0
Stria terminalis, bed nucleus
nTPM: 74.2
2201 Male, age 74, unknown 74.7
2486 Female, age 94, both hemispheres 74.5
1974 Female, age 91, both hemispheres 73.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 70.3
Samples: 152

Max nTPM: 267.7
Min nTPM: 9.5
Std nTPM: 43.3
Median nTPM: 56.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 267.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 229.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 223.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 205.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 177.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 165.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 156.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 153.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 151.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 135.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 134.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 131.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 130.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 128.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 126.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 126.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 125.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 124.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 123.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 122.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 122.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 117.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 108.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 106.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 105.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 103.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 103.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 102.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 100.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 95.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 94.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 93.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 92.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 91.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 90.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 90.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 88.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 87.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 87.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 85.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 84.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 83.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 83.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 82.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 78.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 77.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 76.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 75.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 73.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 73.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 72.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 72.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 70.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 69.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 69.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 69.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 69.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 67.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 67.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 66.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 65.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 64.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 63.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 63.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 62.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 62.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 62.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 61.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 61.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 60.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 60.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 59.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 59.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 57.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 57.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 56.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 55.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 55.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 55.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 55.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 54.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 54.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 54.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 53.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 53.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 53.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 52.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 52.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 52.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 51.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 50.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 50.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 50.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 49.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 49.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 48.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 48.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 48.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 48.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 48.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 48.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 48.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 47.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 47.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 47.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 46.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 46.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 46.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 44.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 43.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 43.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 42.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 42.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 42.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 42.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 41.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 41.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 41.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 39.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 39.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 38.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 38.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 38.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 38.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 38.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 37.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 35.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 35.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 35.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 34.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 32.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 32.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 32.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 31.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 30.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 26.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 25.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 25.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 24.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 24.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 24.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 22.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 22.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 21.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 20.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 19.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 17.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 17.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 14.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 9.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.8
FF:10151-102I7 76 years, female 52.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.6
Pig sample Sample description nTPM
Amygdala
nTPM: 19.6
Samples: 4

Max nTPM: 23.1
Min nTPM: 15.2
Sample A Female 21.9
Sample B Female 18.2
Sample C Male 23.1
Sample D Male 15.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 108.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 108.5
Samples: 4

Max nTPM: 121.9
Min nTPM: 97.6
Sample A Male 97.6
Sample B Male 103.1
Sample C Female 121.9
Sample D Female 111.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.3
74881146 Antisense, RP_060220_01_A04, Mouse strain C57BL/6J (56 days, male) 1.8
69549248 Antisense, RP_050125_01_C03, Mouse strain C57BL/6J (56 days, male) 0.7

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