BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:32.7 nTPM
FANTOM5:214.7 Scaled Tags Per Million
Pig:45.7 nTPM
Mouse:31.9 nTPM
Allen mouse:3.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023370Antibody HPA023374Antibody CAB058695
Glial cells Not detectedMediumMedium
Neuronal cells LowHighMedium






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.3
2846 Female, age 79, unknown 40.0
2288 Male, age 75, left hemisphere 37.9
1857 Female, age 85, left hemisphere 37.8
1854 Male, age 80, left hemisphere 37.7
2289 Male, age 61, right hemisphere 36.8
2290 Female, age 72, unknown 36.3
2481 Female, age 94, left hemisphere 35.8
1781 Male, age 74, unknown 27.8
Claustrum
nTPM: 28.2
1956 Male, age 74, unknown 33.8
2392 Female, age 94, both hemispheres 32.5
2196 Female, age 79, unknown 30.7
2292 Female, age 85, both hemispheres 30.2
2491 Male, age 75, both hemispheres 28.5
2198 Male, age 80, both hemispheres 26.1
2568 Male, age 61, both hemispheres 26.1
2284 Female, age 91, both hemispheres 24.0
2645 Female, age 72, unknown 21.7
Globus pallidus, externus
nTPM: 36.0
2395 Male, age 75, both hemispheres 38.3
1996 Male, age 80, right hemisphere 37.7
2646 Male, age 61, right hemisphere 36.1
2567 Female, age 72, unknown 35.9
2772 Female, age 79, unknown 31.9
Globus pallidus, internus
nTPM: 39.7
2111 Female, age 85, right hemisphere 44.5
2778 Female, age 91, both hemispheres 42.3
2287 Male, age 75, right hemisphere 41.7
2483 Female, age 94, right hemisphere 41.4
2566 Female, age 72, unknown 36.9
2037 Male, age 80, right hemisphere 35.9
1818 Male, age 74, unknown 35.0
Nucleus accumbens
nTPM: 38.8
2391 Female, age 94, left hemisphere 44.3
2698 Female, age 72, unknown 43.0
2824 Male, age 61, right hemisphere 41.9
2286 Male, age 75, left hemisphere 38.5
1856 Female, age 91, right hemisphere 38.1
1783 Male, age 74, unknown 35.7
1806 Female, age 85, left hemisphere 35.4
2732 Male, age 80, right hemisphere 33.2
Nucleus basalis of Meynert
nTPM: 35.9
2393 Male, age 80, right hemisphere 39.4
2569 Male, age 61, both hemispheres 38.5
2821 Male, age 75, both hemispheres 33.8
2484 Female, age 94, left hemisphere 31.8
Nucleus of the diagonal band
nTPM: 30.1
1979 Male, age 74, unknown 34.5
1812 Female, age 91, both hemispheres 31.7
2775 Male, age 80, right hemisphere 29.7
2029 Male, age 61, right hemisphere 27.8
2195 Female, age 85, both hemispheres 26.9
Olfactory tubercle
nTPM: 28.6
2856 Male, age 75, right hemisphere 31.4
1846 Male, age 80, right hemisphere 31.3
2487 Female, age 94, left hemisphere 27.2
1998 Female, age 91, both hemispheres 24.4
Putamen
nTPM: 37.9
2482 Female, age 94, left hemisphere 41.8
1829 Male, age 74, unknown 39.8
1838 Male, age 80, right hemisphere 39.1
2647 Male, age 75, left hemisphere 38.6
1937 Female, age 91, right hemisphere 37.8
2489 Female, age 72, unknown 34.8
2466 Female, age 79, unknown 33.6
Septal nuclei
nTPM: 28.9
2199 Male, age 80, right hemisphere 33.4
2629 Female, age 94, right hemisphere 30.0
2394 Male, age 61, left hemisphere 29.5
2009 Female, age 91, both hemispheres 28.5
2031 Female, age 72, unknown 28.5
1960 Male, age 74, unknown 26.5
2059 Female, age 85, both hemispheres 26.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.6
Samples: 246

Max nTPM: 53.6
Min nTPM: 19.5
Std nTPM: 5.4
Median nTPM: 30.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 53.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 49.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 48.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 48.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 47.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 45.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 45.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 44.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 43.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 43.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 41.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.8
Samples: 246

Max nTPM: 59.8
Min nTPM: 18.7
Std nTPM: 5.9
Median nTPM: 29.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 59.8
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 50.6
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 48.8
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 45.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 45.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 43.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 43.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 43.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 43.1
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 42.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 42.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 32.7
Samples: 205

Max nTPM: 58.9
Min nTPM: 21.6
Std nTPM: 6.0
Median nTPM: 32.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 58.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 55.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 53.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 51.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 48.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 46.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 46.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 46.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 45.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 43.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 43.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 214.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 156.5
FF:10164-103B2 76 years, female 156.5
Globus pallidus
Scaled Tags Per Million: 136.6
FF:10175-103C4 60 years, female 143.6
FF:10161-103A8 76 years, female 129.5
Nucleus accumbens
Scaled Tags Per Million: 136.0
FF:10037-101F1 23-56 years, mixed 136.0
Putamen
Scaled Tags Per Million: 214.7
FF:10176-103C5 60 years, female 214.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.7
Pig sample Sample description nTPM
Caudate
nTPM: 42.4
Samples: 4

Max nTPM: 45.3
Min nTPM: 39.2
Sample A Female 45.3
Sample B Female 39.2
Sample C Male 42.9
Sample D Male 42.1
Putamen
nTPM: 45.7
Samples: 4

Max nTPM: 59.4
Min nTPM: 39.4
Sample A Female 41.5
Sample B Female 39.4
Sample C Male 59.4
Sample D Male 42.3
Septum
nTPM: 44.1
Samples: 4

Max nTPM: 46.2
Min nTPM: 42.5
Sample A Female 43.8
Sample B Female 42.5
Sample C Male 46.2
Sample D Male 44.0
Ventral pallidum
nTPM: 44.1
Samples: 4

Max nTPM: 48.5
Min nTPM: 40.5
Sample A Female 48.5
Sample B Female 40.5
Sample C Male 44.1
Sample D Male 43.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 31.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.5
Samples: 4

Max nTPM: 30.3
Min nTPM: 25.7
Sample A Male 30.3
Sample B Male 26.5
Sample C Female 27.6
Sample D Female 25.7
Septum
nTPM: 31.9
Samples: 4

Max nTPM: 36.0
Min nTPM: 28.4
Sample A Male 33.2
Sample B Male 28.4
Sample C Female 30.0
Sample D Female 36.0
Ventral forebrain
nTPM: 28.0
Samples: 4

Max nTPM: 31.3
Min nTPM: 22.4
Sample A Male 29.2
Sample B Male 31.3
Sample C Female 22.4
Sample D Female 29.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.8
69782850 Antisense, RP_050505_03_H05, Mouse strain C57BL/6J (56 days, male) 3.8
Pallidum
Expression energy: 3.2
69782850 Antisense, RP_050505_03_H05, Mouse strain C57BL/6J (56 days, male) 3.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.