MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:33.4 nTPM
FANTOM5:133.3 Scaled Tags Per Million
Pig:46.5 nTPM
Mouse:36.1 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.5
2019 Male, age 18, unknown 32.8
1830 Male, age 51, unknown 32.3
1870 Female, age 42, unknown 32.1
2411 Female, age 72, unknown 31.4
1833 Male, age 53, unknown 31.2
1827 Male, age 72, unknown 29.1
2219 Male, age 76, both hemispheres 28.3
2828 Female, age 72, unknown 27.4
2666 Male, age 74, left hemisphere 25.6
2586 Male, age 75, left hemisphere 25.3
Dorsal raphe nucleus
nTPM: 28.7
2016 Female, age 72, unknown 31.7
2750 Male, age 76, both hemispheres 30.5
1828 Male, age 53, unknown 28.6
2298 Female, age 72, unknown 26.9
2047 Male, age 72, unknown 25.9
Inferior colliculus
nTPM: 32.0
2849 Male, age 72, unknown 34.5
1848 Female, age 42, unknown 31.7
1890 Male, age 53, unknown 31.5
2097 Female, age 72, unknown 30.4
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Pedunculopontine tegmental nucleus
nTPM: 29.1
2338 Male, age 61, both hemispheres 31.0
2334 Male, age 80, both hemispheres 28.2
1921 Female, age 85, both hemispheres 28.0
Periaquaductal grey, anterior
nTPM: 25.8
2502 Female, age 75, unknown 26.4
1947 Male, age 18, unknown 26.2
1795 Male, age 51, unknown 24.8
Periaquaductal grey, dorsal
nTPM: 34.2
2850 Male, age 76, both hemispheres 38.9
1840 Male, age 53, unknown 34.3
1831 Male, age 72, unknown 32.8
2464 Female, age 72, unknown 30.8
Periaquaductal grey, lateral
nTPM: 30.4
2140 Male, age 76, both hemispheres 34.3
2053 Male, age 18, unknown 29.5
2272 Male, age 74, both hemispheres 27.5
Pretectal area
nTPM: 29.9
1815 Male, age 53, unknown 32.6
2007 Male, age 72, unknown 32.6
1817 Female, age 42, unknown 32.3
1816 Male, age 51, unknown 31.5
1944 Female, age 72, unknown 29.9
2224 Female, age 72, unknown 29.8
2407 Male, age 75, both hemispheres 29.1
2316 Male, age 76, right hemisphere 28.9
2825 Male, age 18, unknown 28.9
2667 Female, age 75, unknown 26.6
2273 Male, age 74, both hemispheres 26.5
Red nucleus
nTPM: 33.6
2503 Female, age 72, unknown 38.9
1865 Male, age 51, unknown 36.5
1821 Female, age 72, unknown 35.1
1954 Female, age 42, unknown 34.7
1904 Male, age 53, unknown 34.2
2588 Male, age 74, left hemisphere 33.4
2823 Male, age 76, right hemisphere 33.4
2227 Male, age 72, unknown 33.3
2785 Male, age 18, unknown 33.3
2769 Male, age 72, unknown 31.3
2725 Female, age 75, unknown 30.7
2584 Male, age 75, left hemisphere 28.6
Substantia nigra
nTPM: 28.0
2590 Female, age 75, unknown 34.5
2583 Male, age 75, right hemisphere 31.6
1889 Female, age 72, unknown 30.6
2409 Female, age 72, unknown 30.0
2699 Male, age 18, unknown 27.9
2665 Male, age 74, both hemispheres 25.9
1941 Male, age 53, unknown 25.8
1851 Male, age 51, unknown 25.0
2241 Male, age 72, unknown 24.7
1916 Female, age 42, unknown 24.2
Superior colliculus
nTPM: 30.2
1995 Male, age 72, unknown 35.8
1913 Female, age 42, unknown 34.3
1895 Male, age 76, right hemisphere 31.7
2587 Male, age 74, left hemisphere 31.4
1839 Male, age 51, unknown 30.2
2087 Female, age 72, unknown 29.1
2668 Female, age 75, unknown 29.0
2261 Male, age 18, unknown 28.6
1796 Male, age 53, unknown 26.9
2664 Male, age 75, both hemispheres 25.2
Ventral tegmental area
nTPM: 28.2
2223 Female, age 72, unknown 31.6
2410 Female, age 72, unknown 29.9
2021 Male, age 53, unknown 28.9
2218 Male, age 76, both hemispheres 28.0
1942 Male, age 51, unknown 25.5
1915 Female, age 42, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.4
Samples: 139

Max nTPM: 67.8
Min nTPM: 17.4
Std nTPM: 9.3
Median nTPM: 31.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 67.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 66.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 56.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 54.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 53.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 52.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 51.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 50.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 50.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 49.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 133.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 133.3
FF:10158-103A5 76 years, female 133.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.5
Pig sample Sample description nTPM
Midbrain
nTPM: 46.5
Samples: 4

Max nTPM: 49.1
Min nTPM: 44.9
Sample A Female 47.0
Sample B Female 44.9
Sample C Male 49.1
Sample D Male 44.9
Periaqueductal gray
nTPM: 46.0
Samples: 3

Max nTPM: 47.0
Min nTPM: 44.6
Sample B Female 44.6
Sample C Male 47.0
Sample D Male 46.4
Substantia nigra
nTPM: 40.5
Samples: 4

Max nTPM: 42.9
Min nTPM: 38.4
Sample A Female 40.9
Sample B Female 38.4
Sample C Male 42.9
Sample D Male 39.8
Superior colliculi
nTPM: 43.5
Samples: 4

Max nTPM: 50.5
Min nTPM: 39.2
Sample A Female 39.4
Sample B Female 39.2
Sample C Male 50.5
Sample D Male 45.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 41.5
Min nTPM: 30.1
Sample A Male 30.1
Sample B Male 37.1
Sample C Female 41.5
Sample D Female 35.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
69782850 Antisense, RP_050505_03_H05, Mouse strain C57BL/6J (56 days, male) 4.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.