MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:8.0 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:17.7 nTPM
Allen mouse:5.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.4
1833 Male, age 53, unknown 10.9
2411 Female, age 72, unknown 10.8
1830 Male, age 51, unknown 10.1
2219 Male, age 76, both hemispheres 10.0
1870 Female, age 42, unknown 9.5
2586 Male, age 75, left hemisphere 9.2
1827 Male, age 72, unknown 8.8
2828 Female, age 72, unknown 8.7
2666 Male, age 74, left hemisphere 8.6
2019 Male, age 18, unknown 7.6
Dorsal raphe nucleus
nTPM: 8.0
2750 Male, age 76, both hemispheres 11.5
1828 Male, age 53, unknown 7.5
2016 Female, age 72, unknown 7.4
2047 Male, age 72, unknown 7.3
2298 Female, age 72, unknown 6.4
Inferior colliculus
nTPM: 8.8
2849 Male, age 72, unknown 10.2
1848 Female, age 42, unknown 8.8
2097 Female, age 72, unknown 8.4
1890 Male, age 53, unknown 8.0
Median raphe nucleus
nTPM: 9.1
2220 Male, age 76, midline 9.1
Pedunculopontine tegmental nucleus
nTPM: 8.8
1921 Female, age 85, both hemispheres 9.1
2334 Male, age 80, both hemispheres 8.7
2338 Male, age 61, both hemispheres 8.6
Periaquaductal grey, anterior
nTPM: 7.5
2502 Female, age 75, unknown 8.8
1795 Male, age 51, unknown 7.6
1947 Male, age 18, unknown 6.2
Periaquaductal grey, dorsal
nTPM: 8.2
2464 Female, age 72, unknown 9.7
1831 Male, age 72, unknown 8.2
2850 Male, age 76, both hemispheres 7.9
1840 Male, age 53, unknown 7.0
Periaquaductal grey, lateral
nTPM: 8.9
2053 Male, age 18, unknown 11.3
2140 Male, age 76, both hemispheres 9.4
2272 Male, age 74, both hemispheres 6.0
Pretectal area
nTPM: 9.4
2316 Male, age 76, right hemisphere 11.7
2667 Female, age 75, unknown 11.2
1815 Male, age 53, unknown 11.0
2007 Male, age 72, unknown 10.3
1817 Female, age 42, unknown 9.8
2825 Male, age 18, unknown 9.4
2224 Female, age 72, unknown 8.8
2407 Male, age 75, both hemispheres 8.5
1816 Male, age 51, unknown 8.4
1944 Female, age 72, unknown 8.0
2273 Male, age 74, both hemispheres 6.3
Red nucleus
nTPM: 9.7
2823 Male, age 76, right hemisphere 13.6
2588 Male, age 74, left hemisphere 11.9
2503 Female, age 72, unknown 10.2
2227 Male, age 72, unknown 9.9
2769 Male, age 72, unknown 9.9
1904 Male, age 53, unknown 9.8
1865 Male, age 51, unknown 9.4
1954 Female, age 42, unknown 8.7
2584 Male, age 75, left hemisphere 8.4
2725 Female, age 75, unknown 8.2
2785 Male, age 18, unknown 8.1
1821 Female, age 72, unknown 7.8
Substantia nigra
nTPM: 7.7
1889 Female, age 72, unknown 9.4
2699 Male, age 18, unknown 9.3
2583 Male, age 75, right hemisphere 8.6
2665 Male, age 74, both hemispheres 8.4
2590 Female, age 75, unknown 8.1
2409 Female, age 72, unknown 7.9
1851 Male, age 51, unknown 7.2
1941 Male, age 53, unknown 7.0
2241 Male, age 72, unknown 6.2
1916 Female, age 42, unknown 5.4
Superior colliculus
nTPM: 9.4
1913 Female, age 42, unknown 10.5
1895 Male, age 76, right hemisphere 10.3
1839 Male, age 51, unknown 10.2
2261 Male, age 18, unknown 10.1
2587 Male, age 74, left hemisphere 9.8
1995 Male, age 72, unknown 9.4
1796 Male, age 53, unknown 9.0
2087 Female, age 72, unknown 8.8
2664 Male, age 75, both hemispheres 8.3
2668 Female, age 75, unknown 7.3
Ventral tegmental area
nTPM: 8.5
2218 Male, age 76, both hemispheres 9.5
2410 Female, age 72, unknown 9.1
2021 Male, age 53, unknown 8.9
1942 Male, age 51, unknown 8.6
2223 Female, age 72, unknown 8.6
1915 Female, age 42, unknown 6.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.0
Samples: 139

Max nTPM: 19.7
Min nTPM: 3.5
Std nTPM: 2.2
Median nTPM: 7.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 14.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 13.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 12.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 12.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 11.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 11.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 11.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 10.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.5
FF:10158-103A5 76 years, female 54.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.9
Pig sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 18.9
Min nTPM: 13.1
Sample A Female 18.9
Sample B Female 13.1
Sample C Male 17.8
Sample D Male 13.9
Periaqueductal gray
nTPM: 12.5
Samples: 3

Max nTPM: 13.1
Min nTPM: 11.9
Sample B Female 12.5
Sample C Male 13.1
Sample D Male 11.9
Substantia nigra
nTPM: 14.0
Samples: 4

Max nTPM: 15.8
Min nTPM: 11.7
Sample A Female 15.8
Sample B Female 11.7
Sample C Male 15.0
Sample D Male 13.4
Superior colliculi
nTPM: 14.1
Samples: 4

Max nTPM: 16.4
Min nTPM: 10.3
Sample A Female 14.0
Sample B Female 10.3
Sample C Male 15.8
Sample D Male 16.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 18.9
Min nTPM: 16.9
Sample A Male 16.9
Sample B Male 17.6
Sample C Female 18.9
Sample D Female 17.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.1
68844725 Antisense, RP_050222_02_C07, Mouse strain C57BL/6J (56 days, male) 5.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.