MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:444.7 nTPM
HPA:444.7 nTPM
GTEx:661.6 nTPM
FANTOM5:794.1 Scaled Tags Per Million
Pig:191.9 nTPM
Mouse:159.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 444.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 372.4
2586 Male, age 75, left hemisphere 454.0
1830 Male, age 51, unknown 426.6
1833 Male, age 53, unknown 420.0
2666 Male, age 74, left hemisphere 408.8
1870 Female, age 42, unknown 370.7
2411 Female, age 72, unknown 354.7
2828 Female, age 72, unknown 351.4
2019 Male, age 18, unknown 341.1
2219 Male, age 76, both hemispheres 318.7
1827 Male, age 72, unknown 277.5
Dorsal raphe nucleus
nTPM: 272.1
2750 Male, age 76, both hemispheres 341.3
2016 Female, age 72, unknown 301.3
1828 Male, age 53, unknown 289.3
2047 Male, age 72, unknown 232.2
2298 Female, age 72, unknown 196.7
Inferior colliculus
nTPM: 275.1
2849 Male, age 72, unknown 310.5
1890 Male, age 53, unknown 289.1
1848 Female, age 42, unknown 285.6
2097 Female, age 72, unknown 215.3
Median raphe nucleus
nTPM: 272.3
2220 Male, age 76, midline 272.3
Pedunculopontine tegmental nucleus
nTPM: 383.7
2338 Male, age 61, both hemispheres 492.8
2334 Male, age 80, both hemispheres 377.7
1921 Female, age 85, both hemispheres 280.7
Periaquaductal grey, anterior
nTPM: 259.9
2502 Female, age 75, unknown 281.2
1947 Male, age 18, unknown 262.9
1795 Male, age 51, unknown 235.5
Periaquaductal grey, dorsal
nTPM: 253.6
2464 Female, age 72, unknown 297.4
2850 Male, age 76, both hemispheres 261.9
1831 Male, age 72, unknown 252.7
1840 Male, age 53, unknown 202.5
Periaquaductal grey, lateral
nTPM: 257.4
2053 Male, age 18, unknown 275.3
2272 Male, age 74, both hemispheres 248.6
2140 Male, age 76, both hemispheres 248.1
Pretectal area
nTPM: 257.6
1815 Male, age 53, unknown 329.8
2407 Male, age 75, both hemispheres 299.6
1817 Female, age 42, unknown 287.7
2825 Male, age 18, unknown 287.3
2007 Male, age 72, unknown 269.5
2316 Male, age 76, right hemisphere 268.0
2667 Female, age 75, unknown 222.6
2224 Female, age 72, unknown 221.4
1816 Male, age 51, unknown 219.3
1944 Female, age 72, unknown 216.2
2273 Male, age 74, both hemispheres 211.7
Red nucleus
nTPM: 444.7
2588 Male, age 74, left hemisphere 548.2
1865 Male, age 51, unknown 507.7
2503 Female, age 72, unknown 491.9
2769 Male, age 72, unknown 480.6
2227 Male, age 72, unknown 475.6
1904 Male, age 53, unknown 468.4
1954 Female, age 42, unknown 412.8
1821 Female, age 72, unknown 408.9
2785 Male, age 18, unknown 404.1
2823 Male, age 76, right hemisphere 396.9
2584 Male, age 75, left hemisphere 391.3
2725 Female, age 75, unknown 349.9
Substantia nigra
nTPM: 299.1
2665 Male, age 74, both hemispheres 357.4
2699 Male, age 18, unknown 342.4
2583 Male, age 75, right hemisphere 342.0
2590 Female, age 75, unknown 321.6
1851 Male, age 51, unknown 292.6
2409 Female, age 72, unknown 290.6
1889 Female, age 72, unknown 286.5
1941 Male, age 53, unknown 260.9
2241 Male, age 72, unknown 249.6
1916 Female, age 42, unknown 247.7
Superior colliculus
nTPM: 308.5
1995 Male, age 72, unknown 381.8
2668 Female, age 75, unknown 361.8
1913 Female, age 42, unknown 357.9
1839 Male, age 51, unknown 337.9
2587 Male, age 74, left hemisphere 334.8
2664 Male, age 75, both hemispheres 302.1
1895 Male, age 76, right hemisphere 270.9
1796 Male, age 53, unknown 258.6
2261 Male, age 18, unknown 240.4
2087 Female, age 72, unknown 238.7
Ventral tegmental area
nTPM: 307.1
2223 Female, age 72, unknown 390.7
2410 Female, age 72, unknown 329.6
2021 Male, age 53, unknown 285.0
1942 Male, age 51, unknown 284.3
2218 Male, age 76, both hemispheres 282.3
1915 Female, age 42, unknown 270.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 661.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 661.6
Samples: 139

Max nTPM: 1971.7
Min nTPM: 107.7
Std nTPM: 423.1
Median nTPM: 548.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1971.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1950.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1840.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1802.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1728.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1689.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1672.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1627.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1626.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1556.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1495.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 794.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 794.1
FF:10158-103A5 76 years, female 794.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 191.9
Pig sample Sample description nTPM
Midbrain
nTPM: 191.9
Samples: 4

Max nTPM: 363.2
Min nTPM: 96.2
Sample A Female 363.2
Sample B Female 198.5
Sample C Male 109.7
Sample D Male 96.2
Periaqueductal gray
nTPM: 118.4
Samples: 3

Max nTPM: 145.8
Min nTPM: 93.7
Sample B Female 145.8
Sample C Male 93.7
Sample D Male 115.8
Substantia nigra
nTPM: 171.3
Samples: 4

Max nTPM: 279.0
Min nTPM: 104.3
Sample A Female 167.9
Sample B Female 104.3
Sample C Male 133.9
Sample D Male 279.0
Superior colliculi
nTPM: 152.0
Samples: 4

Max nTPM: 194.2
Min nTPM: 89.9
Sample A Female 161.3
Sample B Female 89.9
Sample C Male 162.6
Sample D Male 194.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 159.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 159.9
Samples: 4

Max nTPM: 174.4
Min nTPM: 146.4
Sample A Male 154.2
Sample B Male 146.4
Sample C Female 164.5
Sample D Female 174.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70192081 Antisense, RP_050517_01_C01, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.