MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.1 nTPM
HPA:46.1 nTPM
GTEx:49.2 nTPM
FANTOM5:61.3 Scaled Tags Per Million
Pig:60.6 nTPM
Mouse:215.6 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.4
2586 Male, age 75, left hemisphere 55.1
1870 Female, age 42, unknown 47.4
2828 Female, age 72, unknown 47.4
2666 Male, age 74, left hemisphere 46.7
1833 Male, age 53, unknown 44.5
1830 Male, age 51, unknown 43.1
2019 Male, age 18, unknown 43.1
2219 Male, age 76, both hemispheres 42.9
2411 Female, age 72, unknown 42.3
1827 Male, age 72, unknown 41.8
Dorsal raphe nucleus
nTPM: 42.3
2047 Male, age 72, unknown 43.8
1828 Male, age 53, unknown 43.3
2750 Male, age 76, both hemispheres 43.2
2016 Female, age 72, unknown 41.4
2298 Female, age 72, unknown 39.6
Inferior colliculus
nTPM: 42.6
2849 Male, age 72, unknown 45.0
1848 Female, age 42, unknown 43.5
1890 Male, age 53, unknown 41.3
2097 Female, age 72, unknown 40.6
Median raphe nucleus
nTPM: 43.9
2220 Male, age 76, midline 43.9
Pedunculopontine tegmental nucleus
nTPM: 44.3
2338 Male, age 61, both hemispheres 45.8
2334 Male, age 80, both hemispheres 45.3
1921 Female, age 85, both hemispheres 41.9
Periaquaductal grey, anterior
nTPM: 43.9
1947 Male, age 18, unknown 45.0
1795 Male, age 51, unknown 43.9
2502 Female, age 75, unknown 42.7
Periaquaductal grey, dorsal
nTPM: 40.4
2850 Male, age 76, both hemispheres 42.3
1840 Male, age 53, unknown 40.3
2464 Female, age 72, unknown 40.1
1831 Male, age 72, unknown 38.8
Periaquaductal grey, lateral
nTPM: 40.7
2140 Male, age 76, both hemispheres 42.4
2272 Male, age 74, both hemispheres 42.1
2053 Male, age 18, unknown 37.6
Pretectal area
nTPM: 42.1
2825 Male, age 18, unknown 47.1
1817 Female, age 42, unknown 45.3
2007 Male, age 72, unknown 44.1
1815 Male, age 53, unknown 41.9
1944 Female, age 72, unknown 41.6
2316 Male, age 76, right hemisphere 41.6
2667 Female, age 75, unknown 41.6
1816 Male, age 51, unknown 41.4
2224 Female, age 72, unknown 41.0
2407 Male, age 75, both hemispheres 39.3
2273 Male, age 74, both hemispheres 37.9
Red nucleus
nTPM: 46.1
2503 Female, age 72, unknown 49.2
1954 Female, age 42, unknown 48.8
2769 Male, age 72, unknown 48.2
1865 Male, age 51, unknown 47.8
1904 Male, age 53, unknown 47.8
2227 Male, age 72, unknown 47.7
2588 Male, age 74, left hemisphere 46.0
2785 Male, age 18, unknown 45.4
2725 Female, age 75, unknown 44.2
1821 Female, age 72, unknown 44.0
2823 Male, age 76, right hemisphere 42.6
2584 Male, age 75, left hemisphere 41.0
Substantia nigra
nTPM: 42.2
1916 Female, age 42, unknown 48.1
1851 Male, age 51, unknown 45.0
1889 Female, age 72, unknown 44.6
2583 Male, age 75, right hemisphere 44.5
2665 Male, age 74, both hemispheres 44.1
2590 Female, age 75, unknown 43.6
2699 Male, age 18, unknown 43.6
1941 Male, age 53, unknown 39.6
2241 Male, age 72, unknown 35.0
2409 Female, age 72, unknown 33.6
Superior colliculus
nTPM: 43.6
1995 Male, age 72, unknown 47.3
1796 Male, age 53, unknown 45.5
2668 Female, age 75, unknown 45.0
1913 Female, age 42, unknown 44.5
2664 Male, age 75, both hemispheres 43.7
1839 Male, age 51, unknown 43.4
1895 Male, age 76, right hemisphere 42.2
2261 Male, age 18, unknown 41.8
2587 Male, age 74, left hemisphere 41.6
2087 Female, age 72, unknown 41.3
Ventral tegmental area
nTPM: 43.0
1915 Female, age 42, unknown 47.0
2021 Male, age 53, unknown 43.0
2223 Female, age 72, unknown 42.9
2218 Male, age 76, both hemispheres 42.2
2410 Female, age 72, unknown 41.7
1942 Male, age 51, unknown 41.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.2
Samples: 139

Max nTPM: 79.3
Min nTPM: 27.1
Std nTPM: 9.0
Median nTPM: 48.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 79.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 75.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 71.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 71.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 68.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 66.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 66.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 65.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 64.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.3
FF:10158-103A5 76 years, female 61.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.6
Pig sample Sample description nTPM
Midbrain
nTPM: 43.7
Samples: 4

Max nTPM: 55.0
Min nTPM: 36.7
Sample A Female 55.0
Sample B Female 37.7
Sample C Male 45.4
Sample D Male 36.7
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 40.9
Min nTPM: 31.9
Sample B Female 34.5
Sample C Male 40.9
Sample D Male 31.9
Substantia nigra
nTPM: 45.3
Samples: 4

Max nTPM: 52.3
Min nTPM: 37.1
Sample A Female 50.5
Sample B Female 52.3
Sample C Male 41.3
Sample D Male 37.1
Superior colliculi
nTPM: 60.6
Samples: 4

Max nTPM: 101.4
Min nTPM: 38.8
Sample A Female 61.5
Sample B Female 101.4
Sample C Male 40.5
Sample D Male 38.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 215.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 215.6
Samples: 4

Max nTPM: 222.8
Min nTPM: 210.4
Sample A Male 210.5
Sample B Male 222.8
Sample C Female 218.6
Sample D Female 210.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
69873457 Antisense, RP_050512_01_C10, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.