MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.7 nTPM
HPA:50.7 nTPM
GTEx:51.3 nTPM
FANTOM5:244.1 Scaled Tags Per Million
Pig:24.3 nTPM
Mouse:21.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.9
2411 Female, age 72, unknown 53.6
1827 Male, age 72, unknown 52.5
1870 Female, age 42, unknown 52.0
2019 Male, age 18, unknown 47.6
1833 Male, age 53, unknown 46.3
1830 Male, age 51, unknown 46.2
2828 Female, age 72, unknown 43.9
2219 Male, age 76, both hemispheres 43.6
2666 Male, age 74, left hemisphere 43.3
2586 Male, age 75, left hemisphere 40.1
Dorsal raphe nucleus
nTPM: 47.1
2298 Female, age 72, unknown 51.5
2750 Male, age 76, both hemispheres 48.7
2016 Female, age 72, unknown 46.4
2047 Male, age 72, unknown 44.9
1828 Male, age 53, unknown 44.2
Inferior colliculus
nTPM: 49.3
2097 Female, age 72, unknown 55.4
1848 Female, age 42, unknown 49.1
1890 Male, age 53, unknown 46.7
2849 Male, age 72, unknown 46.1
Median raphe nucleus
nTPM: 49.0
2220 Male, age 76, midline 49.0
Pedunculopontine tegmental nucleus
nTPM: 49.4
1921 Female, age 85, both hemispheres 51.3
2334 Male, age 80, both hemispheres 48.5
2338 Male, age 61, both hemispheres 48.4
Periaquaductal grey, anterior
nTPM: 47.2
2502 Female, age 75, unknown 49.4
1947 Male, age 18, unknown 48.9
1795 Male, age 51, unknown 43.2
Periaquaductal grey, dorsal
nTPM: 47.3
1840 Male, age 53, unknown 51.4
2464 Female, age 72, unknown 46.8
1831 Male, age 72, unknown 45.8
2850 Male, age 76, both hemispheres 45.4
Periaquaductal grey, lateral
nTPM: 45.8
2053 Male, age 18, unknown 48.2
2272 Male, age 74, both hemispheres 47.3
2140 Male, age 76, both hemispheres 42.0
Pretectal area
nTPM: 50.2
1816 Male, age 51, unknown 54.6
1815 Male, age 53, unknown 53.1
1817 Female, age 42, unknown 52.8
1944 Female, age 72, unknown 52.8
2007 Male, age 72, unknown 51.1
2224 Female, age 72, unknown 50.2
2273 Male, age 74, both hemispheres 49.7
2667 Female, age 75, unknown 49.4
2825 Male, age 18, unknown 47.4
2407 Male, age 75, both hemispheres 46.3
2316 Male, age 76, right hemisphere 44.5
Red nucleus
nTPM: 47.8
1821 Female, age 72, unknown 57.3
2725 Female, age 75, unknown 50.3
1954 Female, age 42, unknown 50.2
2503 Female, age 72, unknown 49.6
1865 Male, age 51, unknown 49.3
1904 Male, age 53, unknown 48.3
2785 Male, age 18, unknown 46.9
2769 Male, age 72, unknown 45.6
2227 Male, age 72, unknown 45.1
2823 Male, age 76, right hemisphere 45.1
2584 Male, age 75, left hemisphere 42.9
2588 Male, age 74, left hemisphere 42.7
Substantia nigra
nTPM: 50.7
2241 Male, age 72, unknown 59.2
1916 Female, age 42, unknown 53.3
1889 Female, age 72, unknown 53.0
1941 Male, age 53, unknown 52.7
1851 Male, age 51, unknown 50.9
2590 Female, age 75, unknown 49.4
2409 Female, age 72, unknown 48.7
2583 Male, age 75, right hemisphere 46.8
2665 Male, age 74, both hemispheres 46.5
2699 Male, age 18, unknown 46.3
Superior colliculus
nTPM: 47.6
2587 Male, age 74, left hemisphere 50.4
1895 Male, age 76, right hemisphere 50.3
2261 Male, age 18, unknown 49.7
1913 Female, age 42, unknown 49.2
1796 Male, age 53, unknown 48.1
2087 Female, age 72, unknown 48.1
1839 Male, age 51, unknown 47.7
1995 Male, age 72, unknown 45.1
2668 Female, age 75, unknown 44.4
2664 Male, age 75, both hemispheres 42.7
Ventral tegmental area
nTPM: 48.9
2410 Female, age 72, unknown 51.7
1915 Female, age 42, unknown 51.0
2218 Male, age 76, both hemispheres 49.5
2223 Female, age 72, unknown 49.1
1942 Male, age 51, unknown 47.2
2021 Male, age 53, unknown 44.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.3
Samples: 139

Max nTPM: 74.4
Min nTPM: 37.8
Std nTPM: 7.6
Median nTPM: 49.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 74.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 69.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 68.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 68.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 67.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 66.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 65.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 65.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 65.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 244.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 244.1
FF:10158-103A5 76 years, female 244.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.3
Pig sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.0
Sample A Female 21.0
Sample B Female 22.9
Sample C Male 27.3
Sample D Male 23.6
Periaqueductal gray
nTPM: 21.5
Samples: 3

Max nTPM: 22.3
Min nTPM: 20.8
Sample B Female 21.3
Sample C Male 22.3
Sample D Male 20.8
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 23.9
Min nTPM: 20.3
Sample A Female 23.0
Sample B Female 21.6
Sample C Male 23.9
Sample D Male 20.3
Superior colliculi
nTPM: 24.3
Samples: 4

Max nTPM: 27.8
Min nTPM: 22.3
Sample A Female 22.3
Sample B Female 22.9
Sample C Male 27.8
Sample D Male 24.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 22.1
Min nTPM: 21.0
Sample A Male 21.0
Sample B Male 22.1
Sample C Female 21.7
Sample D Female 21.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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