MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA:14.1 nTPM
GTEx:83.6 nTPM
FANTOM5:229.7 Scaled Tags Per Million
Pig:112.7 nTPM
Mouse:75.6 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.6
2411 Female, age 72, unknown 16.5
1830 Male, age 51, unknown 16.1
1833 Male, age 53, unknown 13.5
1870 Female, age 42, unknown 13.1
2828 Female, age 72, unknown 12.7
1827 Male, age 72, unknown 10.1
2219 Male, age 76, both hemispheres 7.2
2019 Male, age 18, unknown 5.5
2586 Male, age 75, left hemisphere 5.4
2666 Male, age 74, left hemisphere 5.3
Dorsal raphe nucleus
nTPM: 11.8
2750 Male, age 76, both hemispheres 19.1
2298 Female, age 72, unknown 12.5
2047 Male, age 72, unknown 10.8
1828 Male, age 53, unknown 8.8
2016 Female, age 72, unknown 7.9
Inferior colliculus
nTPM: 9.1
2849 Male, age 72, unknown 12.6
1848 Female, age 42, unknown 11.3
1890 Male, age 53, unknown 6.7
2097 Female, age 72, unknown 6.0
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Pedunculopontine tegmental nucleus
nTPM: 13.3
2334 Male, age 80, both hemispheres 16.6
1921 Female, age 85, both hemispheres 13.3
2338 Male, age 61, both hemispheres 10.0
Periaquaductal grey, anterior
nTPM: 9.9
1947 Male, age 18, unknown 11.9
1795 Male, age 51, unknown 9.5
2502 Female, age 75, unknown 8.3
Periaquaductal grey, dorsal
nTPM: 8.4
2464 Female, age 72, unknown 11.1
2850 Male, age 76, both hemispheres 8.1
1831 Male, age 72, unknown 7.7
1840 Male, age 53, unknown 6.7
Periaquaductal grey, lateral
nTPM: 10.1
2053 Male, age 18, unknown 10.5
2272 Male, age 74, both hemispheres 10.2
2140 Male, age 76, both hemispheres 9.7
Pretectal area
nTPM: 9.7
2667 Female, age 75, unknown 14.9
2273 Male, age 74, both hemispheres 14.1
2316 Male, age 76, right hemisphere 13.3
2825 Male, age 18, unknown 12.8
2224 Female, age 72, unknown 11.1
2407 Male, age 75, both hemispheres 9.4
1815 Male, age 53, unknown 9.0
1817 Female, age 42, unknown 6.8
1944 Female, age 72, unknown 6.1
2007 Male, age 72, unknown 5.9
1816 Male, age 51, unknown 3.6
Red nucleus
nTPM: 10.1
1865 Male, age 51, unknown 14.9
1954 Female, age 42, unknown 11.6
2503 Female, age 72, unknown 11.6
2769 Male, age 72, unknown 11.4
1821 Female, age 72, unknown 11.3
2227 Male, age 72, unknown 11.0
2823 Male, age 76, right hemisphere 10.0
2725 Female, age 75, unknown 9.5
2588 Male, age 74, left hemisphere 9.1
1904 Male, age 53, unknown 8.5
2785 Male, age 18, unknown 8.1
2584 Male, age 75, left hemisphere 4.0
Substantia nigra
nTPM: 6.3
1941 Male, age 53, unknown 9.8
2699 Male, age 18, unknown 9.3
1916 Female, age 42, unknown 7.5
2583 Male, age 75, right hemisphere 6.2
1851 Male, age 51, unknown 5.8
1889 Female, age 72, unknown 5.0
2409 Female, age 72, unknown 5.0
2590 Female, age 75, unknown 5.0
2665 Male, age 74, both hemispheres 4.8
2241 Male, age 72, unknown 4.4
Superior colliculus
nTPM: 10.1
1913 Female, age 42, unknown 13.5
1839 Male, age 51, unknown 11.7
1995 Male, age 72, unknown 11.7
1895 Male, age 76, right hemisphere 11.4
1796 Male, age 53, unknown 10.8
2587 Male, age 74, left hemisphere 10.8
2087 Female, age 72, unknown 9.0
2668 Female, age 75, unknown 8.6
2261 Male, age 18, unknown 8.1
2664 Male, age 75, both hemispheres 5.9
Ventral tegmental area
nTPM: 11.1
2223 Female, age 72, unknown 16.3
2218 Male, age 76, both hemispheres 12.5
2021 Male, age 53, unknown 12.1
2410 Female, age 72, unknown 11.4
1942 Male, age 51, unknown 7.5
1915 Female, age 42, unknown 6.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.6
Samples: 139

Max nTPM: 165.1
Min nTPM: 43.2
Std nTPM: 23.1
Median nTPM: 78.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 165.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 146.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 146.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 137.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 130.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 128.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 126.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 126.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 126.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 125.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 124.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 229.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 229.7
FF:10158-103A5 76 years, female 229.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 112.7
Pig sample Sample description nTPM
Midbrain
nTPM: 112.7
Samples: 4

Max nTPM: 203.6
Min nTPM: 69.9
Sample A Female 203.6
Sample B Female 104.0
Sample C Male 69.9
Sample D Male 73.1
Periaqueductal gray
nTPM: 95.2
Samples: 3

Max nTPM: 102.8
Min nTPM: 83.1
Sample B Female 99.7
Sample C Male 102.8
Sample D Male 83.1
Substantia nigra
nTPM: 95.2
Samples: 4

Max nTPM: 133.6
Min nTPM: 68.5
Sample A Female 133.6
Sample B Female 68.5
Sample C Male 102.2
Sample D Male 76.4
Superior colliculi
nTPM: 81.4
Samples: 4

Max nTPM: 97.9
Min nTPM: 68.8
Sample A Female 97.9
Sample B Female 68.8
Sample C Male 76.2
Sample D Male 82.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.6
Samples: 4

Max nTPM: 80.0
Min nTPM: 69.9
Sample A Male 80.0
Sample B Male 76.1
Sample C Female 69.9
Sample D Female 76.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
75041432 Antisense, RP_060412_04_B02, Mouse strain C57BL/6J (56 days, male) 2.3
71232692 Antisense, RP_050428_03_F10, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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