MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.1 nTPM
HPA:33.1 nTPM
GTEx:25.7 nTPM
FANTOM5:13.4 Scaled Tags Per Million
Pig:61.2 nTPM
Mouse:35.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.5
1870 Female, age 42, unknown 32.6
2219 Male, age 76, both hemispheres 32.1
1827 Male, age 72, unknown 31.6
2411 Female, age 72, unknown 31.0
2828 Female, age 72, unknown 30.8
2586 Male, age 75, left hemisphere 30.4
2666 Male, age 74, left hemisphere 30.0
1833 Male, age 53, unknown 29.9
1830 Male, age 51, unknown 29.0
2019 Male, age 18, unknown 27.9
Dorsal raphe nucleus
nTPM: 33.0
2298 Female, age 72, unknown 36.0
2047 Male, age 72, unknown 34.4
1828 Male, age 53, unknown 32.0
2750 Male, age 76, both hemispheres 31.7
2016 Female, age 72, unknown 31.1
Inferior colliculus
nTPM: 31.1
2097 Female, age 72, unknown 32.2
1848 Female, age 42, unknown 30.9
2849 Male, age 72, unknown 30.7
1890 Male, age 53, unknown 30.5
Median raphe nucleus
nTPM: 33.1
2220 Male, age 76, midline 33.1
Pedunculopontine tegmental nucleus
nTPM: 30.7
1921 Female, age 85, both hemispheres 32.5
2334 Male, age 80, both hemispheres 32.0
2338 Male, age 61, both hemispheres 27.7
Periaquaductal grey, anterior
nTPM: 30.5
1795 Male, age 51, unknown 33.0
2502 Female, age 75, unknown 30.0
1947 Male, age 18, unknown 28.7
Periaquaductal grey, dorsal
nTPM: 30.8
1840 Male, age 53, unknown 33.1
2850 Male, age 76, both hemispheres 30.4
1831 Male, age 72, unknown 30.3
2464 Female, age 72, unknown 29.3
Periaquaductal grey, lateral
nTPM: 31.7
2053 Male, age 18, unknown 32.2
2272 Male, age 74, both hemispheres 32.1
2140 Male, age 76, both hemispheres 30.7
Pretectal area
nTPM: 30.1
2224 Female, age 72, unknown 35.2
2825 Male, age 18, unknown 34.9
2273 Male, age 74, both hemispheres 31.2
2316 Male, age 76, right hemisphere 29.8
2667 Female, age 75, unknown 29.5
2407 Male, age 75, both hemispheres 29.3
1944 Female, age 72, unknown 29.1
2007 Male, age 72, unknown 29.0
1816 Male, age 51, unknown 27.7
1817 Female, age 42, unknown 27.6
1815 Male, age 53, unknown 27.5
Red nucleus
nTPM: 28.3
2725 Female, age 75, unknown 29.9
1821 Female, age 72, unknown 29.0
2584 Male, age 75, left hemisphere 29.0
2769 Male, age 72, unknown 29.0
2503 Female, age 72, unknown 28.8
2227 Male, age 72, unknown 28.6
2785 Male, age 18, unknown 28.0
2823 Male, age 76, right hemisphere 27.9
2588 Male, age 74, left hemisphere 27.8
1954 Female, age 42, unknown 27.6
1865 Male, age 51, unknown 27.1
1904 Male, age 53, unknown 26.8
Substantia nigra
nTPM: 30.5
1916 Female, age 42, unknown 33.1
1941 Male, age 53, unknown 31.9
2699 Male, age 18, unknown 31.8
1851 Male, age 51, unknown 31.7
2241 Male, age 72, unknown 30.3
2409 Female, age 72, unknown 30.2
1889 Female, age 72, unknown 29.4
2590 Female, age 75, unknown 29.4
2583 Male, age 75, right hemisphere 28.6
2665 Male, age 74, both hemispheres 28.3
Superior colliculus
nTPM: 29.7
1796 Male, age 53, unknown 32.8
1839 Male, age 51, unknown 31.4
1895 Male, age 76, right hemisphere 30.2
2664 Male, age 75, both hemispheres 29.8
2587 Male, age 74, left hemisphere 29.6
2668 Female, age 75, unknown 29.3
1913 Female, age 42, unknown 29.0
2261 Male, age 18, unknown 28.8
2087 Female, age 72, unknown 28.3
1995 Male, age 72, unknown 27.9
Ventral tegmental area
nTPM: 32.4
1915 Female, age 42, unknown 34.0
1942 Male, age 51, unknown 32.9
2218 Male, age 76, both hemispheres 32.6
2021 Male, age 53, unknown 32.5
2410 Female, age 72, unknown 31.7
2223 Female, age 72, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.7
Samples: 139

Max nTPM: 46.4
Min nTPM: 10.9
Std nTPM: 7.5
Median nTPM: 24.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 46.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 43.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 42.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 42.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 41.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 41.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 41.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 40.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 39.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 39.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.4
FF:10158-103A5 76 years, female 13.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.2
Pig sample Sample description nTPM
Midbrain
nTPM: 61.2
Samples: 4

Max nTPM: 137.7
Min nTPM: 26.1
Sample A Female 137.7
Sample B Female 47.4
Sample C Male 26.1
Sample D Male 33.6
Periaqueductal gray
nTPM: 38.6
Samples: 3

Max nTPM: 41.7
Min nTPM: 35.9
Sample B Female 41.7
Sample C Male 35.9
Sample D Male 38.1
Substantia nigra
nTPM: 50.6
Samples: 4

Max nTPM: 67.9
Min nTPM: 31.3
Sample A Female 67.9
Sample B Female 31.3
Sample C Male 42.0
Sample D Male 61.0
Superior colliculi
nTPM: 45.1
Samples: 4

Max nTPM: 64.9
Min nTPM: 27.4
Sample A Female 64.9
Sample B Female 27.4
Sample C Male 42.0
Sample D Male 46.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 40.2
Min nTPM: 30.9
Sample A Male 35.3
Sample B Male 37.3
Sample C Female 30.9
Sample D Female 40.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69782676 Antisense, RP_050505_03_E05, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.