MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.2 nTPM
HPA:22.2 nTPM
GTEx:21.4 nTPM
FANTOM5:132.1 Scaled Tags Per Million
Pig:67.9 nTPM
Mouse:102.4 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
2411 Female, age 72, unknown 19.7
1870 Female, age 42, unknown 19.1
1827 Male, age 72, unknown 18.1
2828 Female, age 72, unknown 17.5
1833 Male, age 53, unknown 17.4
1830 Male, age 51, unknown 16.1
2219 Male, age 76, both hemispheres 16.0
2666 Male, age 74, left hemisphere 15.3
2019 Male, age 18, unknown 13.0
2586 Male, age 75, left hemisphere 9.8
Dorsal raphe nucleus
nTPM: 15.9
2750 Male, age 76, both hemispheres 18.3
2298 Female, age 72, unknown 16.9
2016 Female, age 72, unknown 15.4
1828 Male, age 53, unknown 14.6
2047 Male, age 72, unknown 14.4
Inferior colliculus
nTPM: 13.6
2097 Female, age 72, unknown 15.0
1890 Male, age 53, unknown 13.7
2849 Male, age 72, unknown 13.2
1848 Female, age 42, unknown 12.5
Median raphe nucleus
nTPM: 20.0
2220 Male, age 76, midline 20.0
Pedunculopontine tegmental nucleus
nTPM: 19.8
2338 Male, age 61, both hemispheres 21.6
2334 Male, age 80, both hemispheres 19.3
1921 Female, age 85, both hemispheres 18.6
Periaquaductal grey, anterior
nTPM: 15.7
1947 Male, age 18, unknown 17.8
1795 Male, age 51, unknown 15.6
2502 Female, age 75, unknown 13.7
Periaquaductal grey, dorsal
nTPM: 16.1
1831 Male, age 72, unknown 18.6
1840 Male, age 53, unknown 16.1
2850 Male, age 76, both hemispheres 15.2
2464 Female, age 72, unknown 14.5
Periaquaductal grey, lateral
nTPM: 15.1
2053 Male, age 18, unknown 17.1
2272 Male, age 74, both hemispheres 15.3
2140 Male, age 76, both hemispheres 12.8
Pretectal area
nTPM: 16.6
2224 Female, age 72, unknown 18.2
1816 Male, age 51, unknown 17.2
1944 Female, age 72, unknown 17.1
2273 Male, age 74, both hemispheres 17.1
2825 Male, age 18, unknown 17.1
2316 Male, age 76, right hemisphere 17.0
2667 Female, age 75, unknown 16.9
2407 Male, age 75, both hemispheres 16.6
1815 Male, age 53, unknown 16.4
2007 Male, age 72, unknown 14.6
1817 Female, age 42, unknown 14.2
Red nucleus
nTPM: 17.7
1821 Female, age 72, unknown 23.2
2725 Female, age 75, unknown 20.9
1904 Male, age 53, unknown 19.8
1865 Male, age 51, unknown 17.7
2769 Male, age 72, unknown 17.6
2823 Male, age 76, right hemisphere 17.1
1954 Female, age 42, unknown 16.8
2227 Male, age 72, unknown 16.6
2503 Female, age 72, unknown 16.5
2584 Male, age 75, left hemisphere 16.5
2588 Male, age 74, left hemisphere 15.4
2785 Male, age 18, unknown 14.1
Substantia nigra
nTPM: 22.2
1916 Female, age 42, unknown 30.8
2699 Male, age 18, unknown 25.9
1851 Male, age 51, unknown 24.6
2241 Male, age 72, unknown 22.9
1889 Female, age 72, unknown 21.4
1941 Male, age 53, unknown 21.0
2409 Female, age 72, unknown 20.3
2665 Male, age 74, both hemispheres 19.0
2590 Female, age 75, unknown 18.5
2583 Male, age 75, right hemisphere 18.0
Superior colliculus
nTPM: 16.2
2587 Male, age 74, left hemisphere 20.1
1913 Female, age 42, unknown 18.8
2668 Female, age 75, unknown 18.0
1796 Male, age 53, unknown 17.4
1995 Male, age 72, unknown 15.9
1839 Male, age 51, unknown 15.8
2261 Male, age 18, unknown 15.4
1895 Male, age 76, right hemisphere 15.2
2087 Female, age 72, unknown 14.1
2664 Male, age 75, both hemispheres 11.7
Ventral tegmental area
nTPM: 20.2
2218 Male, age 76, both hemispheres 23.6
1915 Female, age 42, unknown 23.3
2410 Female, age 72, unknown 21.2
2223 Female, age 72, unknown 18.9
1942 Male, age 51, unknown 17.2
2021 Male, age 53, unknown 17.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.4
Samples: 139

Max nTPM: 44.0
Min nTPM: 6.2
Std nTPM: 6.4
Median nTPM: 20.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 44.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 37.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 36.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 35.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 33.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 31.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 31.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 31.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.1
FF:10158-103A5 76 years, female 132.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.9
Pig sample Sample description nTPM
Midbrain
nTPM: 64.4
Samples: 4

Max nTPM: 71.1
Min nTPM: 55.5
Sample A Female 68.5
Sample B Female 71.1
Sample C Male 62.5
Sample D Male 55.5
Periaqueductal gray
nTPM: 58.6
Samples: 3

Max nTPM: 67.8
Min nTPM: 52.2
Sample B Female 55.8
Sample C Male 67.8
Sample D Male 52.2
Substantia nigra
nTPM: 67.9
Samples: 4

Max nTPM: 92.5
Min nTPM: 45.7
Sample A Female 92.5
Sample B Female 58.7
Sample C Male 74.5
Sample D Male 45.7
Superior colliculi
nTPM: 54.8
Samples: 4

Max nTPM: 62.2
Min nTPM: 48.1
Sample A Female 62.2
Sample B Female 48.1
Sample C Male 55.2
Sample D Male 53.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 102.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.4
Samples: 4

Max nTPM: 104.0
Min nTPM: 101.5
Sample A Male 101.5
Sample B Male 102.1
Sample C Female 102.0
Sample D Female 104.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
69887415 Antisense, RP_050512_03_F07, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.