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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:305.4 nTPM
GTEx:305.4 nTPM
FANTOM5:126.8 Scaled Tags Per Million
Pig:198.8 nTPM
Mouse:170.9 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA008779
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Low
Inner plexiform layer Not detected
Ganglion cells Medium
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA015907
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 305.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 305.4
Samples: 105

Max nTPM: 679.3
Min nTPM: 119.3
Std nTPM: 94.5
Median nTPM:
490_1 67 years, female 679.3
117_1 61 years, male 514.6
491_1 89 years, female 492.7
89_1 63 years, male 489.4
217_1 76 years, male 472.0
526_1 61 years, male 459.5
32_1 67 years, male 453.0
415_1 77 years, female 443.7
311_1 78 years, male 441.8
495_1 57 years, female 424.6
139_1 64 years, female 421.5
149_1 88 years, male 416.7
119_1 70 years, female 416.1
162_1 79 years, female 415.2
6_1 73 years, female 413.6
499_1 55 years, female 400.7
447_1 81 years, male 399.4
347_1 72 years, male 397.9
324_1 76 years, male 391.3
81_1 67 years, male 389.0
414_1 84 years, female 380.1
466_1 57 years, female 379.9
307_1 66 years, female 374.1
321_1 62 years, female 374.1
313_1 79 years, female 374.0
142_1 61 years, female 370.3
251_1 78 years, male 365.3
126_1 63 years, male 364.8
43_1 64 years, female 361.5
9_1 66 years, female 358.9
2_1 77 years, female 356.7
348_1 84 years, male 354.4
352_1 62 years, male 349.0
246_1 77 years, male 342.3
35_1 74 years, female 341.8
468_1 89 years, male 339.6
266_1 85 years, male 338.0
293_1 68 years, female 334.2
18_1 88 years, male 333.1
153_1 70 years, female 333.1
115_1 83 years, male 327.4
229_1 69 years, female 326.0
145_1 84 years, male 319.2
315_1 62 years, female 316.1
518_1 75 years, female 310.5
322_1 76 years, male 310.1
350_1 84 years, female 306.0
99_1 64 years, male 303.1
413_1 59 years, female 299.8
425_1 59 years, female 299.1
172_1 72 years, female 298.4
237_1 82 years, male 297.1
480_1 63 years, male 296.6
375_1 74 years, female 291.2
389_1 86 years, female 290.2
286_1 68 years, female 289.2
42_1 85 years, male 287.6
120_1 70 years, female 287.0
355_1 70 years, female 284.3
406_1 79 years, male 280.8
386_1 76 years, male 280.3
319_1 81 years, male 276.7
317_1 60 years, male 270.8
292_1 71 years, male 270.6
405_1 91 years, male 268.0
137_1 83 years, male 267.1
308_1 70 years, female 266.8
109_1 81 years, female 261.3
335_1 73 years, female 260.0
243_1 75 years, male 256.9
173_1 67 years, male 255.5
503_1 68 years, male 252.4
396_1 62 years, male 251.0
316_1 62 years, male 250.3
189_1 76 years, male 249.1
17_1 71 years, male 248.4
291_1 76 years, male 247.3
41_1 94 years, female 246.6
517_1 88 years, male 244.0
218_1 71 years, female 242.6
265_1 87 years, male 241.0
320_1 89 years, female 241.0
384_1 83 years, male 238.8
254_1 77 years, female 237.6
177_1 74 years, male 236.9
318_1 68 years, male 234.8
376_1 75 years, female 224.3
349_1 83 years, male 219.5
404_1 82 years, female 216.0
354_1 81 years, female 204.8
351_1 91 years, male 204.1
377_1 82 years, female 201.5
353_1 82 years, female 195.7
163_1 78 years, male 190.0
394_1 75 years, female 188.7
379_1 60 years, male 187.1
4_1 88 years, female 179.3
356_1 87 years, female 175.7
314_1 67 years, male 164.6
288_1 66 years, female 163.1
501_1 88 years, male 159.4
264_1 73 years, female 156.9
506_1 65 years, male 125.4
295_1 61 years, female 122.1
452_1 88 years, female 119.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 126.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 126.8
FF:10030-101E3 24-65 years, mixed 126.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 198.8
Pig sample Sample description nTPM
Retina
nTPM: 198.8
Samples: 4

Max nTPM: 200.8
Min nTPM: 194.9
Sample A Female 200.8
Sample B Female 199.5
Sample C Male 199.8
Sample D Male 194.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 170.9
Mouse sample Sample description nTPM
Retina
nTPM: 171.0
Samples: 4

Max nTPM: 207.4
Min nTPM: 137.2
Sample A Male 192.4
Sample B Male 146.8
Sample C Female 137.2
Sample D Female 207.4

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