BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.3 nTPM
HPA:45.3 nTPM
GTEx:47.4 nTPM
FANTOM5:106.7 Scaled Tags Per Million
Pig:63.7 nTPM
Mouse:53.3 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035011
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.6
2481 Female, age 94, left hemisphere 47.0
2846 Female, age 79, unknown 43.7
1857 Female, age 85, left hemisphere 43.5
2290 Female, age 72, unknown 41.8
1854 Male, age 80, left hemisphere 41.6
2288 Male, age 75, left hemisphere 39.8
1781 Male, age 74, unknown 38.6
2289 Male, age 61, right hemisphere 36.7
Claustrum
nTPM: 41.3
2392 Female, age 94, both hemispheres 51.8
1956 Male, age 74, unknown 42.7
2284 Female, age 91, both hemispheres 41.2
2491 Male, age 75, both hemispheres 41.1
2292 Female, age 85, both hemispheres 40.7
2568 Male, age 61, both hemispheres 39.9
2198 Male, age 80, both hemispheres 39.6
2196 Female, age 79, unknown 39.4
2645 Female, age 72, unknown 34.9
Globus pallidus, externus
nTPM: 41.8
2395 Male, age 75, both hemispheres 48.2
1996 Male, age 80, right hemisphere 42.7
2772 Female, age 79, unknown 41.7
2567 Female, age 72, unknown 39.4
2646 Male, age 61, right hemisphere 36.8
Globus pallidus, internus
nTPM: 42.2
2287 Male, age 75, right hemisphere 46.1
2111 Female, age 85, right hemisphere 44.3
2778 Female, age 91, both hemispheres 43.2
2037 Male, age 80, right hemisphere 42.3
1818 Male, age 74, unknown 41.8
2483 Female, age 94, right hemisphere 40.7
2566 Female, age 72, unknown 37.0
Nucleus accumbens
nTPM: 44.0
2824 Male, age 61, right hemisphere 48.9
1856 Female, age 91, right hemisphere 47.7
2391 Female, age 94, left hemisphere 46.6
2698 Female, age 72, unknown 43.9
2286 Male, age 75, left hemisphere 43.8
1783 Male, age 74, unknown 42.2
1806 Female, age 85, left hemisphere 42.1
2732 Male, age 80, right hemisphere 37.2
Nucleus basalis of Meynert
nTPM: 41.0
2821 Male, age 75, both hemispheres 45.5
2393 Male, age 80, right hemisphere 42.8
2484 Female, age 94, left hemisphere 40.1
2569 Male, age 61, both hemispheres 35.6
Nucleus of the diagonal band
nTPM: 45.3
2029 Male, age 61, right hemisphere 47.9
1979 Male, age 74, unknown 45.2
2195 Female, age 85, both hemispheres 45.0
1812 Female, age 91, both hemispheres 44.8
2775 Male, age 80, right hemisphere 43.4
Olfactory tubercle
nTPM: 43.1
1998 Female, age 91, both hemispheres 46.0
1846 Male, age 80, right hemisphere 45.6
2856 Male, age 75, right hemisphere 40.5
2487 Female, age 94, left hemisphere 40.2
Putamen
nTPM: 40.9
2466 Female, age 79, unknown 44.0
1838 Male, age 80, right hemisphere 43.6
1937 Female, age 91, right hemisphere 42.1
2482 Female, age 94, left hemisphere 41.8
1829 Male, age 74, unknown 41.5
2489 Female, age 72, unknown 36.9
2647 Male, age 75, left hemisphere 36.7
Septal nuclei
nTPM: 44.0
2031 Female, age 72, unknown 51.3
1960 Male, age 74, unknown 46.7
2009 Female, age 91, both hemispheres 45.0
2629 Female, age 94, right hemisphere 44.0
2394 Male, age 61, left hemisphere 42.3
2199 Male, age 80, right hemisphere 42.1
2059 Female, age 85, both hemispheres 36.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.8
Samples: 246

Max nTPM: 99.8
Min nTPM: 19.6
Std nTPM: 10.3
Median nTPM: 38.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 99.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 90.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 75.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 74.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 70.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 67.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 64.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 64.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 63.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 62.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.4
Samples: 246

Max nTPM: 113.2
Min nTPM: 21.5
Std nTPM: 11.4
Median nTPM: 45.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 113.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 93.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 81.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 79.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 78.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 76.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 75.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 75.3
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 71.3
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 71.2
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 70.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 42.5
Samples: 205

Max nTPM: 90.8
Min nTPM: 19.1
Std nTPM: 12.4
Median nTPM: 40.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 90.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 86.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 85.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 83.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 78.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 75.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 74.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 73.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 71.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 70.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 66.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 93.2
FF:10164-103B2 76 years, female 93.2
Globus pallidus
Scaled Tags Per Million: 80.0
FF:10161-103A8 76 years, female 93.0
FF:10175-103C4 60 years, female 67.0
Nucleus accumbens
Scaled Tags Per Million: 65.2
FF:10037-101F1 23-56 years, mixed 65.2
Putamen
Scaled Tags Per Million: 106.7
FF:10176-103C5 60 years, female 106.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 63.7
Pig sample Sample description nTPM
Caudate
nTPM: 41.6
Samples: 4

Max nTPM: 46.2
Min nTPM: 37.4
Sample A Female 46.2
Sample B Female 37.4
Sample C Male 41.9
Sample D Male 40.9
Putamen
nTPM: 63.7
Samples: 4

Max nTPM: 75.1
Min nTPM: 48.4
Sample A Female 75.1
Sample B Female 48.4
Sample C Male 72.3
Sample D Male 58.9
Septum
nTPM: 58.2
Samples: 4

Max nTPM: 66.7
Min nTPM: 50.9
Sample A Female 60.3
Sample B Female 50.9
Sample C Male 66.7
Sample D Male 55.0
Ventral pallidum
nTPM: 55.4
Samples: 4

Max nTPM: 61.4
Min nTPM: 49.7
Sample A Female 49.7
Sample B Female 54.7
Sample C Male 61.4
Sample D Male 55.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.3
Samples: 4

Max nTPM: 48.3
Min nTPM: 35.3
Sample A Male 35.3
Sample B Male 40.9
Sample C Female 48.3
Sample D Female 36.7
Septum
nTPM: 53.3
Samples: 4

Max nTPM: 56.3
Min nTPM: 50.4
Sample A Male 50.4
Sample B Male 56.3
Sample C Female 52.7
Sample D Female 53.9
Ventral forebrain
nTPM: 44.8
Samples: 4

Max nTPM: 48.7
Min nTPM: 39.3
Sample A Male 48.7
Sample B Male 39.3
Sample C Female 46.2
Sample D Female 45.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
73514797 Antisense, RP_051121_03_B05, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
73514797 Antisense, RP_051121_03_B05, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.