BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.3 nTPM
HPA:0.3 nTPM
GTEx:0.4 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:0.2 nTPM
Mouse:0.4 nTPM

CAUDATE - Antibody stainingi
Antibody HPA048892Antibody HPA056815Antibody CAB009507
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2481 Female, age 94, left hemisphere 0.4
2289 Male, age 61, right hemisphere 0.3
2288 Male, age 75, left hemisphere 0.2
2290 Female, age 72, unknown 0.2
1854 Male, age 80, left hemisphere 0.1
1857 Female, age 85, left hemisphere 0.1
2846 Female, age 79, unknown 0.1
1781 Male, age 74, unknown 0.0
Claustrum
nTPM: 0.0
2198 Male, age 80, both hemispheres 0.1
2284 Female, age 91, both hemispheres 0.1
2292 Female, age 85, both hemispheres 0.1
2645 Female, age 72, unknown 0.1
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.3
2772 Female, age 79, unknown 0.5
2646 Male, age 61, right hemisphere 0.3
1996 Male, age 80, right hemisphere 0.2
2395 Male, age 75, both hemispheres 0.2
2567 Female, age 72, unknown 0.2
Globus pallidus, internus
nTPM: 0.2
1818 Male, age 74, unknown 0.4
2037 Male, age 80, right hemisphere 0.3
2566 Female, age 72, unknown 0.3
2111 Female, age 85, right hemisphere 0.2
2287 Male, age 75, right hemisphere 0.2
2483 Female, age 94, right hemisphere 0.1
2778 Female, age 91, both hemispheres 0.1
Nucleus accumbens
nTPM: 0.1
1783 Male, age 74, unknown 0.1
1806 Female, age 85, left hemisphere 0.1
1856 Female, age 91, right hemisphere 0.1
2286 Male, age 75, left hemisphere 0.1
2732 Male, age 80, right hemisphere 0.1
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.2
2569 Male, age 61, both hemispheres 0.4
2393 Male, age 80, right hemisphere 0.1
2484 Female, age 94, left hemisphere 0.1
2821 Male, age 75, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 0.0
1812 Female, age 91, both hemispheres 0.1
1979 Male, age 74, unknown 0.0
2029 Male, age 61, right hemisphere 0.0
2195 Female, age 85, both hemispheres 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.0
1846 Male, age 80, right hemisphere 0.1
1998 Female, age 91, both hemispheres 0.0
2487 Female, age 94, left hemisphere 0.0
2856 Male, age 75, right hemisphere 0.0
Putamen
nTPM: 0.2
1829 Male, age 74, unknown 0.3
2489 Female, age 72, unknown 0.3
2466 Female, age 79, unknown 0.2
2482 Female, age 94, left hemisphere 0.2
2647 Male, age 75, left hemisphere 0.2
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
Septal nuclei
nTPM: 0.0
2059 Female, age 85, both hemispheres 0.1
2199 Male, age 80, right hemisphere 0.1
2394 Male, age 61, left hemisphere 0.1
1960 Male, age 74, unknown 0.0
2009 Female, age 91, both hemispheres 0.0
2031 Female, age 72, unknown 0.0
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.3
Samples: 246

Max nTPM: 1.2
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 0.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 0.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 0.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 0.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 0.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 0.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.4
Samples: 246

Max nTPM: 1.4
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 1.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 1.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 1.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 1.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 1.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 1.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 1.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 1.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 1.1
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 1.1
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 1.0
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Brain - Putamen (basal ganglia)
Average nTPM: 0.3
Samples: 205

Max nTPM: 1.1
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 0.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 0.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 0.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 0.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 0.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 0.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 0.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 0.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 0.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 0.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.2
Putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.2
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.2
Ventral pallidum
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.4
Sample D Female 0.0
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.3
Sample B Male 0.0
Sample C Female 0.5
Sample D Female 0.1
Ventral forebrain
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.3
Sample A Male 0.5
Sample B Male 0.3
Sample C Female 0.3
Sample D Female 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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