MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.4 nTPM
HPA:58.4 nTPM
GTEx:25.3 nTPM
FANTOM5:216.8 Scaled Tags Per Million
Pig:50.2 nTPM
Mouse:42.6 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.2
2411 Female, age 72, unknown 58.1
1830 Male, age 51, unknown 55.6
1833 Male, age 53, unknown 53.1
1870 Female, age 42, unknown 51.6
2586 Male, age 75, left hemisphere 50.3
2019 Male, age 18, unknown 49.0
2828 Female, age 72, unknown 48.4
2219 Male, age 76, both hemispheres 42.6
1827 Male, age 72, unknown 37.5
2666 Male, age 74, left hemisphere 35.9
Dorsal raphe nucleus
nTPM: 40.4
2750 Male, age 76, both hemispheres 58.5
2016 Female, age 72, unknown 41.9
1828 Male, age 53, unknown 38.7
2047 Male, age 72, unknown 34.0
2298 Female, age 72, unknown 29.2
Inferior colliculus
nTPM: 40.4
1890 Male, age 53, unknown 43.8
1848 Female, age 42, unknown 40.5
2849 Male, age 72, unknown 39.3
2097 Female, age 72, unknown 38.0
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Pedunculopontine tegmental nucleus
nTPM: 39.2
2334 Male, age 80, both hemispheres 44.1
1921 Female, age 85, both hemispheres 39.9
2338 Male, age 61, both hemispheres 33.5
Periaquaductal grey, anterior
nTPM: 37.8
2502 Female, age 75, unknown 43.4
1947 Male, age 18, unknown 37.8
1795 Male, age 51, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 31.6
2464 Female, age 72, unknown 44.6
1831 Male, age 72, unknown 28.6
1840 Male, age 53, unknown 27.9
2850 Male, age 76, both hemispheres 25.1
Periaquaductal grey, lateral
nTPM: 33.7
2272 Male, age 74, both hemispheres 38.5
2053 Male, age 18, unknown 34.5
2140 Male, age 76, both hemispheres 28.0
Pretectal area
nTPM: 38.5
2316 Male, age 76, right hemisphere 52.2
1815 Male, age 53, unknown 44.2
2007 Male, age 72, unknown 41.0
2667 Female, age 75, unknown 40.6
1817 Female, age 42, unknown 39.1
2407 Male, age 75, both hemispheres 38.9
2825 Male, age 18, unknown 37.9
2273 Male, age 74, both hemispheres 35.3
1944 Female, age 72, unknown 32.6
2224 Female, age 72, unknown 32.2
1816 Male, age 51, unknown 30.0
Red nucleus
nTPM: 58.4
2503 Female, age 72, unknown 66.4
2769 Male, age 72, unknown 66.0
1865 Male, age 51, unknown 65.3
2227 Male, age 72, unknown 65.2
1904 Male, age 53, unknown 64.7
2785 Male, age 18, unknown 62.2
2588 Male, age 74, left hemisphere 58.7
1954 Female, age 42, unknown 56.8
1821 Female, age 72, unknown 56.1
2823 Male, age 76, right hemisphere 55.3
2584 Male, age 75, left hemisphere 42.9
2725 Female, age 75, unknown 40.6
Substantia nigra
nTPM: 38.4
2583 Male, age 75, right hemisphere 45.6
2590 Female, age 75, unknown 45.1
2409 Female, age 72, unknown 43.7
1851 Male, age 51, unknown 41.9
1889 Female, age 72, unknown 40.6
2699 Male, age 18, unknown 40.0
1916 Female, age 42, unknown 32.5
1941 Male, age 53, unknown 32.3
2241 Male, age 72, unknown 31.6
2665 Male, age 74, both hemispheres 30.6
Superior colliculus
nTPM: 44.1
1913 Female, age 42, unknown 62.2
1995 Male, age 72, unknown 60.1
1895 Male, age 76, right hemisphere 50.2
1839 Male, age 51, unknown 44.2
2587 Male, age 74, left hemisphere 42.4
2668 Female, age 75, unknown 41.9
1796 Male, age 53, unknown 37.5
2261 Male, age 18, unknown 35.6
2664 Male, age 75, both hemispheres 34.4
2087 Female, age 72, unknown 32.6
Ventral tegmental area
nTPM: 41.0
2410 Female, age 72, unknown 51.6
2223 Female, age 72, unknown 43.6
1942 Male, age 51, unknown 40.3
2021 Male, age 53, unknown 39.1
1915 Female, age 42, unknown 37.1
2218 Male, age 76, both hemispheres 34.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.3
Samples: 139

Max nTPM: 69.8
Min nTPM: 9.7
Std nTPM: 8.6
Median nTPM: 24.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 69.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 52.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 47.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 46.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 45.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 42.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 40.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 40.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 39.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 39.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 216.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 216.8
FF:10158-103A5 76 years, female 216.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.2
Pig sample Sample description nTPM
Midbrain
nTPM: 50.2
Samples: 4

Max nTPM: 61.6
Min nTPM: 43.0
Sample A Female 61.6
Sample B Female 48.5
Sample C Male 47.7
Sample D Male 43.0
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 50.8
Min nTPM: 37.1
Sample B Female 50.8
Sample C Male 37.1
Sample D Male 42.4
Substantia nigra
nTPM: 48.1
Samples: 4

Max nTPM: 67.9
Min nTPM: 35.0
Sample A Female 46.1
Sample B Female 35.0
Sample C Male 43.5
Sample D Male 67.9
Superior colliculi
nTPM: 43.8
Samples: 4

Max nTPM: 53.4
Min nTPM: 25.8
Sample A Female 48.8
Sample B Female 25.8
Sample C Male 47.0
Sample D Male 53.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.6
Samples: 4

Max nTPM: 44.3
Min nTPM: 38.5
Sample A Male 38.5
Sample B Male 43.9
Sample C Female 44.3
Sample D Female 43.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
70546366 Antisense, RP_050623_04_B08, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.