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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:104.0 nTPM
HPA:104.0 nTPM
GTEx:128.5 nTPM
FANTOM5:83.3 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:75.1 nTPM
Allen mouse:15.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 104.0
Sample id Sample description nTPM
Amygdala
nTPM: 83.9
1987 Female, age 91, left hemisphere 94.4
2517 Female, age 94, left hemisphere 86.1
2514 Male, age 75, right hemisphere 80.8
2814 Male, age 76, right hemisphere 80.5
2695 Female, age 67, right hemisphere 77.8
Basal amygdala
nTPM: 89.2
2243 Female, age 91, right hemisphere 100.3
2685 Female, age 94, left hemisphere 95.9
2609 Male, age 75, right hemisphere 90.1
2110 Male, age 80, left hemisphere 85.0
1955 Male, age 76, both hemispheres 82.6
2827 Female, age 67, right hemisphere 81.3
Central amygdala
nTPM: 95.4
2826 Female, age 94, left hemisphere 102.6
2239 Male, age 80, left hemisphere 101.4
2515 Male, age 75, right hemisphere 98.2
2701 Female, age 91, right hemisphere 92.9
1905 Male, age 76, both hemispheres 82.1
Corticomedial amygdala
nTPM: 89.4
2829 Male, age 80, left hemisphere 96.7
2429 Female, age 94, left hemisphere 94.4
2242 Female, age 91, right hemisphere 94.1
2535 Female, age 67, right hemisphere 87.6
2428 Male, age 75, right hemisphere 87.4
2240 Male, age 76, both hemispheres 76.0
Lateral amygdala
nTPM: 92.4
2255 Female, age 91, right hemisphere 100.9
2256 Male, age 80, left hemisphere 99.1
2534 Female, age 94, left hemisphere 96.5
1883 Male, age 76, both hemispheres 87.7
2516 Male, age 75, right hemisphere 87.5
2830 Female, age 67, right hemisphere 83.0
Stria terminalis, bed nucleus
nTPM: 104.0
1974 Female, age 91, both hemispheres 108.2
2486 Female, age 94, both hemispheres 106.0
2201 Male, age 74, unknown 97.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 128.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 128.5
Samples: 152

Max nTPM: 364.9
Min nTPM: 11.7
Std nTPM: 45.2
Median nTPM: 126.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 364.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 269.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 247.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 232.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 220.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 201.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 201.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 197.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 193.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 192.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 191.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 189.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 186.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 180.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 179.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 177.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 176.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 175.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 174.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 173.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 172.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 169.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 168.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 168.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 168.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 166.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 160.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 160.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 159.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 159.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 158.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 156.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 155.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 155.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 154.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 153.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 153.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 152.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 152.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 151.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 150.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 150.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 149.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 148.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 147.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 146.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 146.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 145.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 144.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 144.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 144.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 141.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 140.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 140.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 140.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 139.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 139.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 138.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 137.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 135.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 134.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 134.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 133.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 132.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 131.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 130.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 129.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 129.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 129.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 128.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 128.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 128.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 127.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 127.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 126.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 126.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 126.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 126.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 125.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 125.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 124.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 123.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 122.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 120.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 119.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 118.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 118.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 117.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 116.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 113.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 113.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 113.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 112.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 111.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 111.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 111.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 110.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 109.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 109.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 109.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 108.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 108.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 107.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 107.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 105.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 104.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 104.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 104.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 103.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 102.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 102.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 102.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 100.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 100.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 98.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 96.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 96.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 96.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 95.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 94.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 93.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 92.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 91.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 88.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 87.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 84.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 80.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 80.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 78.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 77.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 76.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 75.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 71.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 70.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 69.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 68.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 67.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 67.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 66.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 66.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 65.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 59.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 59.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 54.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 49.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 31.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 83.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 83.3
FF:10151-102I7 76 years, female 83.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25.7
Pig sample Sample description nTPM
Amygdala
nTPM: 25.7
Samples: 4

Max nTPM: 32.8
Min nTPM: 21.0
Sample A Female 32.8
Sample B Female 22.8
Sample C Male 26.3
Sample D Male 21.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 75.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 75.1
Samples: 4

Max nTPM: 79.4
Min nTPM: 72.7
Sample A Male 72.7
Sample B Male 75.3
Sample C Female 79.4
Sample D Female 73.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.2
100143575 Antisense, RP_110407_01_F08, Mouse strain C57BL/6J (56 days, male) 15.2

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