MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.0 nTPM
HPA:21.0 nTPM
GTEx:30.4 nTPM
FANTOM5:98.3 Scaled Tags Per Million
Pig:65.3 nTPM
Mouse:59.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.1
1870 Female, age 42, unknown 20.9
2411 Female, age 72, unknown 20.9
1830 Male, age 51, unknown 19.4
2019 Male, age 18, unknown 19.4
1833 Male, age 53, unknown 18.8
2828 Female, age 72, unknown 17.0
2219 Male, age 76, both hemispheres 16.8
1827 Male, age 72, unknown 16.6
2586 Male, age 75, left hemisphere 16.1
2666 Male, age 74, left hemisphere 14.7
Dorsal raphe nucleus
nTPM: 17.7
2750 Male, age 76, both hemispheres 21.5
1828 Male, age 53, unknown 17.5
2047 Male, age 72, unknown 16.8
2298 Female, age 72, unknown 16.8
2016 Female, age 72, unknown 15.8
Inferior colliculus
nTPM: 16.0
2097 Female, age 72, unknown 17.1
1848 Female, age 42, unknown 16.5
1890 Male, age 53, unknown 15.6
2849 Male, age 72, unknown 14.8
Median raphe nucleus
nTPM: 21.0
2220 Male, age 76, midline 21.0
Pedunculopontine tegmental nucleus
nTPM: 18.6
2334 Male, age 80, both hemispheres 20.5
2338 Male, age 61, both hemispheres 18.4
1921 Female, age 85, both hemispheres 16.9
Periaquaductal grey, anterior
nTPM: 17.3
2502 Female, age 75, unknown 18.4
1947 Male, age 18, unknown 17.6
1795 Male, age 51, unknown 15.9
Periaquaductal grey, dorsal
nTPM: 15.9
2850 Male, age 76, both hemispheres 17.0
1840 Male, age 53, unknown 16.0
2464 Female, age 72, unknown 15.7
1831 Male, age 72, unknown 14.9
Periaquaductal grey, lateral
nTPM: 16.5
2272 Male, age 74, both hemispheres 16.9
2140 Male, age 76, both hemispheres 16.4
2053 Male, age 18, unknown 16.1
Pretectal area
nTPM: 16.7
2273 Male, age 74, both hemispheres 18.5
2007 Male, age 72, unknown 17.8
1815 Male, age 53, unknown 17.7
2667 Female, age 75, unknown 17.0
1817 Female, age 42, unknown 16.9
2224 Female, age 72, unknown 16.8
1944 Female, age 72, unknown 16.6
2825 Male, age 18, unknown 16.5
1816 Male, age 51, unknown 15.9
2316 Male, age 76, right hemisphere 15.8
2407 Male, age 75, both hemispheres 14.6
Red nucleus
nTPM: 20.2
1821 Female, age 72, unknown 24.3
1865 Male, age 51, unknown 22.5
1904 Male, age 53, unknown 21.6
1954 Female, age 42, unknown 21.5
2769 Male, age 72, unknown 20.8
2227 Male, age 72, unknown 20.5
2823 Male, age 76, right hemisphere 20.1
2503 Female, age 72, unknown 20.0
2725 Female, age 75, unknown 18.0
2785 Male, age 18, unknown 17.8
2588 Male, age 74, left hemisphere 17.7
2584 Male, age 75, left hemisphere 17.4
Substantia nigra
nTPM: 19.5
2409 Female, age 72, unknown 23.7
2241 Male, age 72, unknown 22.6
1916 Female, age 42, unknown 22.0
1851 Male, age 51, unknown 20.3
2699 Male, age 18, unknown 20.0
1889 Female, age 72, unknown 19.0
1941 Male, age 53, unknown 18.6
2583 Male, age 75, right hemisphere 18.2
2590 Female, age 75, unknown 17.6
2665 Male, age 74, both hemispheres 13.5
Superior colliculus
nTPM: 16.7
2668 Female, age 75, unknown 18.7
1913 Female, age 42, unknown 18.5
2587 Male, age 74, left hemisphere 17.4
2261 Male, age 18, unknown 17.0
1839 Male, age 51, unknown 16.7
1796 Male, age 53, unknown 16.5
1995 Male, age 72, unknown 16.5
2087 Female, age 72, unknown 16.3
1895 Male, age 76, right hemisphere 15.4
2664 Male, age 75, both hemispheres 14.2
Ventral tegmental area
nTPM: 19.9
2223 Female, age 72, unknown 24.0
2410 Female, age 72, unknown 20.7
2218 Male, age 76, both hemispheres 20.4
1915 Female, age 42, unknown 19.0
1942 Male, age 51, unknown 17.8
2021 Male, age 53, unknown 17.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.4
Samples: 139

Max nTPM: 60.3
Min nTPM: 16.5
Std nTPM: 7.8
Median nTPM: 28.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 60.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 54.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 51.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 50.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 49.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 48.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 47.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 46.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 42.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.3
FF:10158-103A5 76 years, female 98.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.3
Pig sample Sample description nTPM
Midbrain
nTPM: 65.3
Samples: 4

Max nTPM: 127.7
Min nTPM: 42.4
Sample A Female 127.7
Sample B Female 48.8
Sample C Male 42.4
Sample D Male 42.4
Periaqueductal gray
nTPM: 38.5
Samples: 3

Max nTPM: 39.2
Min nTPM: 37.5
Sample B Female 38.9
Sample C Male 37.5
Sample D Male 39.2
Substantia nigra
nTPM: 53.4
Samples: 4

Max nTPM: 65.9
Min nTPM: 38.6
Sample A Female 65.9
Sample B Female 38.6
Sample C Male 50.7
Sample D Male 58.5
Superior colliculi
nTPM: 45.4
Samples: 4

Max nTPM: 52.9
Min nTPM: 31.8
Sample A Female 52.9
Sample B Female 31.8
Sample C Male 47.5
Sample D Male 49.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.7
Samples: 4

Max nTPM: 62.6
Min nTPM: 57.5
Sample A Male 59.5
Sample B Male 62.6
Sample C Female 57.5
Sample D Female 59.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70474809 Antisense, RP_050623_01_A08, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.