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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:99.2 nTPM
HPA:31.8 nTPM
GTEx:99.2 nTPM
FANTOM5:67.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA021466Antibody HPA024424
Glandular cells Not detectedMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 31.8
overview
Male, age 65
Small intestine sample 232
nTPM: 22
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 40.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 37.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 26.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 99.2
Samples: 187

Max nTPM: 329.4
Min nTPM: 9.0
Std nTPM: 78.9
Median nTPM: 72.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 329.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 316.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 307.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 304.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 300.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 289.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 286.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 271.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 266.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 265.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 264.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 260.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 260.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 251.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 250.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 247.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 238.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 232.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 229.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 224.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 223.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 221.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 210.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 209.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 208.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 207.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 207.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 200.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 199.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 199.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 198.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 194.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 178.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 175.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 175.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 172.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 166.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 165.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 164.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 152.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 151.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 146.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 145.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 137.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 136.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 135.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 132.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 129.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 128.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 127.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 126.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 124.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 122.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 122.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 119.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 119.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 119.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 117.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 115.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 114.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 113.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 112.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 109.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 108.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 108.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 107.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 105.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 98.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 98.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 98.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 97.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 95.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 92.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 91.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 89.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 89.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 89.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 89.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 88.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 87.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 86.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 85.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 83.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 81.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 80.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 80.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 78.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 78.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 75.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 75.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 74.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 73.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 73.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 72.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 71.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 70.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 70.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 67.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 66.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 65.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 65.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 64.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 64.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 63.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 62.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 61.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 60.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 59.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 59.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 58.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 57.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 57.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 56.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 56.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 54.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 54.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 54.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 51.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 50.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 50.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 50.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 49.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 49.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 49.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 49.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 48.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 48.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 47.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 46.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 46.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 45.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 44.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 44.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 43.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 43.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 43.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 42.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 41.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 41.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 40.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 39.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 39.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 38.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 38.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 36.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 36.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 35.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 34.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 34.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 32.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 32.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 32.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 31.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 30.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 30.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 30.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 29.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 29.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 29.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 28.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 28.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 27.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 25.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 25.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 25.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 24.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 23.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 21.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 20.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 20.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 19.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 19.6
GTEX-1192X-2526-SM-59868 50-59 years, male 19.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 19.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 18.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 17.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 16.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 16.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 15.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 15.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 15.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 15.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 14.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 13.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 12.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 12.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 9.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 67.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 67.8
FF:10024-101D6 15,40,85 years, mixed 67.8

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