HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:16.1 nTPM
HPA:16.1 nTPM
GTEx:15.2 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:19.1 nTPM
Mouse:26.0 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006988
Glial cells Low
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Hippocampus
nTPM: 15.3
1898 Male, age 80, left hemisphere 17.3
1855 Male, age 76, left hemisphere 16.3
2529 Female, age 94, left hemisphere 14.9
2621 Female, age 67, right hemisphere 14.9
1911 Female, age 85, right hemisphere 14.3
2148 Female, age 91, left hemisphere 14.3
Dentate gyrus
nTPM: 15.3
2528 Male, age 74, both hemispheres 17.2
2010 Male, age 76, both hemispheres 16.3
1927 Female, age 91, both hemispheres 15.6
2530 Female, age 94, left hemisphere 15.3
2246 Female, age 85, both hemispheres 14.5
2531 Female, age 67, both hemispheres 12.9
Entorhinal gyrus
nTPM: 14.1
2117 Female, age 91, right hemisphere 15.6
1938 Female, age 85, left hemisphere 15.4
2764 Male, age 80, right hemisphere 14.6
1787 Male, age 76, left hemisphere 14.4
2613 Female, age 94, left hemisphere 12.9
2686 Male, age 75, right hemisphere 11.5
Hippocampus, CA1
nTPM: 15.8
2527 Male, age 74, both hemispheres 17.5
2749 Male, age 80, left hemisphere 16.9
1873 Female, age 85, both hemispheres 16.6
2045 Male, age 76, both hemispheres 14.4
2082 Female, age 91, right hemisphere 13.6
Hippocampus, CA2
nTPM: 16.1
2249 Male, age 74, both hemispheres 18.2
1892 Male, age 76, both hemispheres 17.2
1963 Male, age 80, left hemisphere 16.3
2437 Female, age 94, left hemisphere 15.0
1940 Female, age 85, left hemisphere 14.8
2113 Female, age 91, right hemisphere 14.8
Hippocampus, CA3
nTPM: 15.6
2436 Male, age 74, both hemispheres 18.6
1867 Male, age 76, both hemispheres 16.6
2137 Male, age 80, left hemisphere 15.8
1891 Female, age 85, both hemispheres 15.7
2861 Female, age 67, both hemispheres 13.4
2620 Female, age 94, left hemisphere 13.3
Parahippocampal cortex
nTPM: 14.3
2250 Female, age 67, right hemisphere 16.3
1990 Female, age 91, right hemisphere 16.0
1850 Male, age 80, both hemispheres 15.7
1933 Female, age 85, both hemispheres 15.4
2018 Male, age 76, both hemispheres 14.4
2532 Female, age 72, left hemisphere 14.1
2245 Female, age 91, both hemispheres 14.0
2693 Female, age 94, both hemispheres 14.0
2692 Male, age 74, both hemispheres 11.9
2622 Female, age 67, right hemisphere 11.1
Perirhinal gyrus
nTPM: 15.2
1794 Male, age 80, right hemisphere 15.6
1847 Female, age 91, left hemisphere 15.6
1841 Female, age 85, right hemisphere 15.5
2521 Female, age 94, right hemisphere 14.7
2848 Male, age 76, right hemisphere 14.4
Subiculum
nTPM: 14.2
2729 Female, age 91, right hemisphere 15.4
1901 Male, age 80, both hemispheres 15.1
1977 Female, age 85, both hemispheres 15.0
2042 Male, age 76, both hemispheres 13.8
2438 Female, age 94, left hemisphere 13.2
2619 Male, age 74, both hemispheres 13.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.2
Samples: 197

Max nTPM: 31.0
Min nTPM: 8.6
Std nTPM: 2.8
Median nTPM: 15.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 31.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 27.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 23.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 22.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 21.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 21.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 20.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 20.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 19.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 19.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 19.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.9
FF:10153-102I9 76 years, female 32.6
FF:10169-103B7 60 years, female 27.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.1
Samples: 4

Max nTPM: 23.1
Min nTPM: 13.8
Sample A Female 23.1
Sample B Female 18.7
Sample C Male 20.6
Sample D Male 13.8
Entorhinal cortex
nTPM: 16.3
Samples: 4

Max nTPM: 18.8
Min nTPM: 13.6
Sample A Female 15.9
Sample B Female 18.8
Sample C Male 16.8
Sample D Male 13.6
Subiculum
nTPM: 17.3
Samples: 4

Max nTPM: 21.3
Min nTPM: 15.8
Sample A Female 21.3
Sample B Female 15.8
Sample C Male 16.1
Sample D Male 16.0
Ventral hippocampus
nTPM: 17.7
Samples: 4

Max nTPM: 20.9
Min nTPM: 15.1
Sample A Female 20.9
Sample B Female 15.1
Sample C Male 17.5
Sample D Male 17.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.6
Samples: 4

Max nTPM: 25.6
Min nTPM: 23.6
Sample A Male 24.8
Sample B Male 23.6
Sample C Female 24.3
Sample D Female 25.6
Hippocampal formation
nTPM: 26.0
Samples: 4

Max nTPM: 27.1
Min nTPM: 24.4
Sample A Male 24.4
Sample B Male 26.0
Sample C Female 27.1
Sample D Female 26.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
70200806 Antisense, RP_050517_02_E05, Mouse strain C57BL/6J (56 days, male) 1.2

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