MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:379.2 nTPM
HPA:379.2 nTPM
GTEx:295.2 nTPM
FANTOM5:173.4 Scaled Tags Per Million
Mouse:403.0 nTPM
Allen mouse:9.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 379.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 342.0
1870 Female, age 42, unknown 364.0
2411 Female, age 72, unknown 355.8
2828 Female, age 72, unknown 353.4
1830 Male, age 51, unknown 344.9
1833 Male, age 53, unknown 344.6
1827 Male, age 72, unknown 343.8
2019 Male, age 18, unknown 332.1
2586 Male, age 75, left hemisphere 328.3
2666 Male, age 74, left hemisphere 328.0
2219 Male, age 76, both hemispheres 324.9
Dorsal raphe nucleus
nTPM: 379.2
2298 Female, age 72, unknown 416.9
2047 Male, age 72, unknown 388.3
2750 Male, age 76, both hemispheres 373.7
2016 Female, age 72, unknown 365.4
1828 Male, age 53, unknown 351.9
Inferior colliculus
nTPM: 347.2
2097 Female, age 72, unknown 354.4
2849 Male, age 72, unknown 348.0
1848 Female, age 42, unknown 345.1
1890 Male, age 53, unknown 341.3
Median raphe nucleus
nTPM: 372.1
2220 Male, age 76, midline 372.1
Pedunculopontine tegmental nucleus
nTPM: 356.0
2334 Male, age 80, both hemispheres 369.6
2338 Male, age 61, both hemispheres 350.5
1921 Female, age 85, both hemispheres 348.0
Periaquaductal grey, anterior
nTPM: 361.1
1947 Male, age 18, unknown 370.3
1795 Male, age 51, unknown 364.6
2502 Female, age 75, unknown 348.3
Periaquaductal grey, dorsal
nTPM: 359.1
2850 Male, age 76, both hemispheres 382.1
1840 Male, age 53, unknown 368.4
2464 Female, age 72, unknown 345.7
1831 Male, age 72, unknown 340.2
Periaquaductal grey, lateral
nTPM: 373.1
2272 Male, age 74, both hemispheres 396.2
2053 Male, age 18, unknown 363.0
2140 Male, age 76, both hemispheres 360.1
Pretectal area
nTPM: 352.2
2273 Male, age 74, both hemispheres 404.4
2224 Female, age 72, unknown 385.5
2825 Male, age 18, unknown 358.7
2667 Female, age 75, unknown 357.2
1817 Female, age 42, unknown 348.1
1815 Male, age 53, unknown 342.7
2316 Male, age 76, right hemisphere 341.0
2007 Male, age 72, unknown 338.4
1944 Female, age 72, unknown 334.1
1816 Male, age 51, unknown 332.5
2407 Male, age 75, both hemispheres 331.2
Red nucleus
nTPM: 346.7
1821 Female, age 72, unknown 359.9
1904 Male, age 53, unknown 359.5
2503 Female, age 72, unknown 357.6
1954 Female, age 42, unknown 357.0
2725 Female, age 75, unknown 353.7
1865 Male, age 51, unknown 349.8
2227 Male, age 72, unknown 348.9
2769 Male, age 72, unknown 347.5
2823 Male, age 76, right hemisphere 347.0
2785 Male, age 18, unknown 339.4
2588 Male, age 74, left hemisphere 322.6
2584 Male, age 75, left hemisphere 317.4
Substantia nigra
nTPM: 345.6
1851 Male, age 51, unknown 357.9
2699 Male, age 18, unknown 350.5
1916 Female, age 42, unknown 350.2
2590 Female, age 75, unknown 347.7
2241 Male, age 72, unknown 345.4
2665 Male, age 74, both hemispheres 342.9
2409 Female, age 72, unknown 342.3
1941 Male, age 53, unknown 341.6
1889 Female, age 72, unknown 341.5
2583 Male, age 75, right hemisphere 336.5
Superior colliculus
nTPM: 347.8
1995 Male, age 72, unknown 361.2
1796 Male, age 53, unknown 357.5
2587 Male, age 74, left hemisphere 356.3
1913 Female, age 42, unknown 353.7
2261 Male, age 18, unknown 350.7
1839 Male, age 51, unknown 349.7
2668 Female, age 75, unknown 342.5
1895 Male, age 76, right hemisphere 339.0
2087 Female, age 72, unknown 337.9
2664 Male, age 75, both hemispheres 329.5
Ventral tegmental area
nTPM: 360.2
1915 Female, age 42, unknown 365.7
2021 Male, age 53, unknown 364.8
2223 Female, age 72, unknown 364.4
2410 Female, age 72, unknown 362.8
1942 Male, age 51, unknown 352.9
2218 Male, age 76, both hemispheres 350.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 295.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 295.2
Samples: 139

Max nTPM: 705.1
Min nTPM: 116.7
Std nTPM: 93.1
Median nTPM: 268.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 705.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 613.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 553.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 544.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 517.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 517.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 482.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 470.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 459.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 458.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 425.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.4
FF:10158-103A5 76 years, female 173.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 403.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.8
Sample A Male 1.2
Sample B Male 1.9
Sample C Female 2.3
Sample D Female 0.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.9
68910954 Antisense, RP_041208_02_A08, Mouse strain C57BL/6J (56 days, male) 9.9
Midbrain
Expression energy: 9.9
68910954 Antisense, RP_041208_02_A08, Mouse strain C57BL/6J (56 days, male) 9.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.