MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:51.9 nTPM
HPA:51.9 nTPM
GTEx:62.6 nTPM
FANTOM5:0.7 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:0.0 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.7
1830 Male, age 51, unknown 52.8
1870 Female, age 42, unknown 52.5
2411 Female, age 72, unknown 51.1
1833 Male, age 53, unknown 50.8
2019 Male, age 18, unknown 45.6
2666 Male, age 74, left hemisphere 43.5
2828 Female, age 72, unknown 43.1
2219 Male, age 76, both hemispheres 41.4
1827 Male, age 72, unknown 38.8
2586 Male, age 75, left hemisphere 37.6
Dorsal raphe nucleus
nTPM: 38.0
2750 Male, age 76, both hemispheres 49.2
2016 Female, age 72, unknown 43.0
1828 Male, age 53, unknown 37.1
2298 Female, age 72, unknown 30.6
2047 Male, age 72, unknown 30.3
Inferior colliculus
nTPM: 37.2
1890 Male, age 53, unknown 38.8
1848 Female, age 42, unknown 37.3
2849 Male, age 72, unknown 36.6
2097 Female, age 72, unknown 36.0
Median raphe nucleus
nTPM: 31.6
2220 Male, age 76, midline 31.6
Pedunculopontine tegmental nucleus
nTPM: 38.9
2334 Male, age 80, both hemispheres 43.5
1921 Female, age 85, both hemispheres 40.0
2338 Male, age 61, both hemispheres 33.2
Periaquaductal grey, anterior
nTPM: 39.1
2502 Female, age 75, unknown 47.0
1947 Male, age 18, unknown 37.6
1795 Male, age 51, unknown 32.5
Periaquaductal grey, dorsal
nTPM: 34.8
2464 Female, age 72, unknown 43.7
1831 Male, age 72, unknown 35.7
1840 Male, age 53, unknown 30.4
2850 Male, age 76, both hemispheres 29.6
Periaquaductal grey, lateral
nTPM: 34.2
2053 Male, age 18, unknown 38.6
2272 Male, age 74, both hemispheres 33.3
2140 Male, age 76, both hemispheres 30.7
Pretectal area
nTPM: 37.2
2316 Male, age 76, right hemisphere 50.7
1815 Male, age 53, unknown 44.6
2407 Male, age 75, both hemispheres 41.4
2825 Male, age 18, unknown 41.2
1817 Female, age 42, unknown 36.2
2007 Male, age 72, unknown 36.1
2224 Female, age 72, unknown 33.8
2273 Male, age 74, both hemispheres 33.6
1944 Female, age 72, unknown 31.1
2667 Female, age 75, unknown 30.6
1816 Male, age 51, unknown 30.1
Red nucleus
nTPM: 51.9
2823 Male, age 76, right hemisphere 58.2
1865 Male, age 51, unknown 58.1
2503 Female, age 72, unknown 57.6
1821 Female, age 72, unknown 56.7
1904 Male, age 53, unknown 55.0
2785 Male, age 18, unknown 52.0
2227 Male, age 72, unknown 51.6
2769 Male, age 72, unknown 50.9
1954 Female, age 42, unknown 49.8
2588 Male, age 74, left hemisphere 49.1
2725 Female, age 75, unknown 44.2
2584 Male, age 75, left hemisphere 39.3
Substantia nigra
nTPM: 41.1
2409 Female, age 72, unknown 50.7
2590 Female, age 75, unknown 45.5
2241 Male, age 72, unknown 44.0
1851 Male, age 51, unknown 43.7
2699 Male, age 18, unknown 42.9
2665 Male, age 74, both hemispheres 39.7
1889 Female, age 72, unknown 38.5
2583 Male, age 75, right hemisphere 38.5
1941 Male, age 53, unknown 35.7
1916 Female, age 42, unknown 32.3
Superior colliculus
nTPM: 44.7
1913 Female, age 42, unknown 60.4
1995 Male, age 72, unknown 58.8
1895 Male, age 76, right hemisphere 53.0
1839 Male, age 51, unknown 45.1
2587 Male, age 74, left hemisphere 45.0
2668 Female, age 75, unknown 44.5
2664 Male, age 75, both hemispheres 37.4
1796 Male, age 53, unknown 37.1
2087 Female, age 72, unknown 33.6
2261 Male, age 18, unknown 31.9
Ventral tegmental area
nTPM: 40.4
2410 Female, age 72, unknown 46.0
1942 Male, age 51, unknown 42.0
2021 Male, age 53, unknown 40.4
2223 Female, age 72, unknown 40.2
1915 Female, age 42, unknown 38.0
2218 Male, age 76, both hemispheres 35.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.6
Samples: 139

Max nTPM: 210.4
Min nTPM: 12.7
Std nTPM: 35.0
Median nTPM: 54.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 210.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 163.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 162.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 156.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 152.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 146.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 140.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 140.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 127.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 121.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 120.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.7
FF:10158-103A5 76 years, female 0.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.8
Pig sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 45.0
Min nTPM: 28.5
Sample A Female 38.4
Sample B Female 45.0
Sample C Male 28.5
Sample D Male 32.0
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 37.3
Min nTPM: 21.1
Sample B Female 37.3
Sample C Male 21.1
Sample D Male 32.5
Substantia nigra
nTPM: 42.8
Samples: 4

Max nTPM: 66.7
Min nTPM: 31.5
Sample A Female 31.5
Sample B Female 38.8
Sample C Male 34.3
Sample D Male 66.7
Superior colliculi
nTPM: 33.6
Samples: 4

Max nTPM: 39.7
Min nTPM: 27.4
Sample A Female 29.2
Sample B Female 27.4
Sample C Male 38.0
Sample D Male 39.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.1
Samples: 4

Max nTPM: 86.0
Min nTPM: 73.6
Sample A Male 85.6
Sample B Male 86.0
Sample C Female 83.3
Sample D Female 73.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
71570751 Antisense, RP_050512_02_F04, Mouse strain C57BL/6J (56 days, male) 1.7
70302192 Antisense, RP_050607_03_G08, Mouse strain C57BL/6J (56 days, male) 0.0
74736450 Antisense, RP_060306_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0
69838239 Antisense, RP_050224_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 1.7
71570751 Antisense, RP_050512_02_F04, Mouse strain C57BL/6J (56 days, male) 1.7
70302192 Antisense, RP_050607_03_G08, Mouse strain C57BL/6J (56 days, male) 0.0
74736450 Antisense, RP_060306_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0
69838239 Antisense, RP_050224_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 1.7
71570751 Antisense, RP_050512_02_F04, Mouse strain C57BL/6J (56 days, male) 1.7
70302192 Antisense, RP_050607_03_G08, Mouse strain C57BL/6J (56 days, male) 0.0
74736450 Antisense, RP_060306_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0
69838239 Antisense, RP_050224_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 1.7
71570751 Antisense, RP_050512_02_F04, Mouse strain C57BL/6J (56 days, male) 1.7
70302192 Antisense, RP_050607_03_G08, Mouse strain C57BL/6J (56 days, male) 0.0
74736450 Antisense, RP_060306_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0
69838239 Antisense, RP_050224_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 1.7
71570751 Antisense, RP_050512_02_F04, Mouse strain C57BL/6J (56 days, male) 1.7
70302192 Antisense, RP_050607_03_G08, Mouse strain C57BL/6J (56 days, male) 0.0
74736450 Antisense, RP_060306_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0
69838239 Antisense, RP_050224_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 1.7
71570751 Antisense, RP_050512_02_F04, Mouse strain C57BL/6J (56 days, male) 1.7
70302192 Antisense, RP_050607_03_G08, Mouse strain C57BL/6J (56 days, male) 0.0
74736450 Antisense, RP_060306_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0
69838239 Antisense, RP_050224_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.