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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:53.1 nTPM
GTEx:35.0 nTPM
FANTOM5:112.8 Scaled Tags Per Million
Pig:70.1 nTPM

PUTAMEN - Annotated protein expression
Pending normal tissue analysis

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 53.1
Sample id Sample description nTPM
Putamen
nTPM: 53.1
2489 Female, age 72, unknown 69.0
2466 Female, age 79, unknown 67.1
1829 Male, age 74, unknown 65.8
1838 Male, age 80, right hemisphere 55.3
1937 Female, age 91, right hemisphere 42.3
2647 Male, age 75, left hemisphere 39.1
2482 Female, age 94, left hemisphere 33.4

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.0
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 35.0
Samples: 205

Max nTPM: 70.1
Min nTPM: 14.1
Std nTPM: 10.3
Median nTPM: 34.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 70.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 62.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 58.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 56.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 55.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 54.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 54.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 53.5
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 51.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 51.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 50.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 50.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 50.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 50.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 49.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 49.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 49.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 49.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 49.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 48.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 48.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 47.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 47.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 47.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 47.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 47.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 47.0
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 46.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 46.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 46.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 46.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 45.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 45.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 45.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 45.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 45.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 44.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 44.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 44.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 44.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 44.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 43.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 43.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 43.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 43.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 43.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 43.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 43.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 43.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 43.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 43.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 43.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 43.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 42.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 42.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 42.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 42.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 41.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 41.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 41.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 41.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 41.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 41.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 41.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 41.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 40.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 40.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 40.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 39.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 39.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 39.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 39.4
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 39.2
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 39.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 39.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 38.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 38.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 38.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 38.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 37.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 37.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 37.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 37.4
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 36.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 36.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 36.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 36.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 36.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 36.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 36.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 36.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 36.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 36.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 35.7
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 35.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 35.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 35.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 35.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 35.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 34.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 34.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 34.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 34.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 34.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 34.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 34.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 34.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 33.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 33.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 33.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 33.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 33.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 33.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 33.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 32.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 32.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 32.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 32.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 32.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 32.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 32.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 32.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 31.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 31.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 31.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 31.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 31.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 31.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 31.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 30.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 30.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 30.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 29.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 29.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 29.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 29.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 29.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 29.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 29.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 29.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 29.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 29.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 28.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 28.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 28.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 28.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 28.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 28.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 28.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 28.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 28.1
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 28.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 27.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 27.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 27.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 27.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 27.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 27.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 27.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 26.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 26.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 26.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 25.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 25.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 25.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 25.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 25.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 24.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 24.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 24.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 24.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 24.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 24.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 24.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 24.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 24.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 24.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 24.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 23.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 23.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 23.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 22.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 22.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 21.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 21.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 21.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 21.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 20.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 19.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 19.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 19.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 18.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 18.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 18.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 17.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 17.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 17.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 16.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 16.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 16.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 15.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 15.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 15.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 14.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 14.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 112.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 112.8
FF:10176-103C5 60 years, female 112.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.1
Pig sample Sample description nTPM
Putamen
nTPM: 70.1
Samples: 4

Max nTPM: 93.5
Min nTPM: 25.2
Sample A Female 25.2
Sample B Female 70.4
Sample C Male 93.5
Sample D Male 91.3

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